Strain Fitness in Pseudomonas simiae WCS417 around PS417_02300

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02295 and PS417_02300 are separated by 158 nucleotidesPS417_02300 and PS417_02310 are separated by 113 nucleotides PS417_02295: PS417_02295 - polymerase, at 524,368 to 526,224 _02295 PS417_02300: PS417_02300 - lipid transporter ATP-binding/permease, at 526,383 to 528,188 _02300 PS417_02310: PS417_02310 - heptose 1-phosphate adenyltransferase, at 528,302 to 529,726 _02310 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -1 0 1at 526.263 kb on + strandat 526.276 kb on - strandat 526.278 kb on - strandat 526.278 kb on - strandat 526.329 kb on + strandat 526.330 kb on - strandat 528.262 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
526,263 + -1.0
526,276 - -0.4
526,278 - -0.3
526,278 - -0.1
526,329 + +0.0
526,330 - -0.1
528,262 + -0.0

Or see this region's nucleotide sequence