Strain Fitness in Pseudomonas simiae WCS417 around PS417_02295

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02285 and PS417_02290 overlap by 4 nucleotidesPS417_02290 and PS417_02295 are separated by 55 nucleotidesPS417_02295 and PS417_02300 are separated by 158 nucleotides PS417_02285: PS417_02285 - glycosyl transferase family 1, at 522,286 to 523,434 _02285 PS417_02290: PS417_02290 - glycosyl transferase, at 523,431 to 524,312 _02290 PS417_02295: PS417_02295 - polymerase, at 524,368 to 526,224 _02295 PS417_02300: PS417_02300 - lipid transporter ATP-binding/permease, at 526,383 to 528,188 _02300 Position (kb) 524 525 526 527Strain fitness (log2 ratio) -1 0 1at 523.421 kb on + strandat 523.422 kb on - strandat 523.425 kb on + strandat 523.425 kb on + strandat 524.095 kb on - strand, within PS417_02290at 524.352 kb on + strandat 524.367 kb on - strandat 524.396 kb on - strandat 526.263 kb on + strandat 526.276 kb on - strandat 526.278 kb on - strandat 526.278 kb on - strandat 526.329 kb on + strandat 526.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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523,421 + +0.7
523,422 - -0.2
523,425 + -0.3
523,425 + +1.3
524,095 - PS417_02290 0.75 +0.9
524,352 + -1.2
524,367 - -0.4
524,396 - -0.1
526,263 + -1.0
526,276 - -0.4
526,278 - -0.3
526,278 - -0.1
526,329 + +0.0
526,330 - -0.1

Or see this region's nucleotide sequence