Strain Fitness in Pseudomonas simiae WCS417 around PS417_02285

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02280 and PS417_02285 are separated by 59 nucleotidesPS417_02285 and PS417_02290 overlap by 4 nucleotidesPS417_02290 and PS417_02295 are separated by 55 nucleotides PS417_02280: PS417_02280 - GlcNAc-PI de-N-acetylase, at 520,826 to 522,226 _02280 PS417_02285: PS417_02285 - glycosyl transferase family 1, at 522,286 to 523,434 _02285 PS417_02290: PS417_02290 - glycosyl transferase, at 523,431 to 524,312 _02290 PS417_02295: PS417_02295 - polymerase, at 524,368 to 526,224 _02295 Position (kb) 522 523 524Strain fitness (log2 ratio) -2 -1 0 1at 521.802 kb on + strand, within PS417_02280at 521.839 kb on + strand, within PS417_02280at 522.259 kb on - strandat 522.286 kb on - strandat 523.421 kb on + strandat 523.422 kb on - strandat 523.425 kb on + strandat 523.425 kb on + strandat 524.095 kb on - strand, within PS417_02290at 524.352 kb on + strandat 524.367 kb on - strandat 524.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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521,802 + PS417_02280 0.70 +0.4
521,839 + PS417_02280 0.72 -1.8
522,259 - -0.5
522,286 - -0.0
523,421 + +0.7
523,422 - -0.2
523,425 + -0.3
523,425 + +1.3
524,095 - PS417_02290 0.75 +0.9
524,352 + -1.2
524,367 - -0.4
524,396 - -0.1

Or see this region's nucleotide sequence