Strain Fitness in Pseudomonas simiae WCS417 around PS417_22920

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22910 and PS417_22915 are separated by 2 nucleotidesPS417_22915 and PS417_22920 are separated by 5 nucleotidesPS417_22920 and PS417_22925 are separated by 250 nucleotides PS417_22910: PS417_22910 - tRNA (guanine-N1)-methyltransferase, at 4,964,086 to 4,964,838 _22910 PS417_22915: PS417_22915 - 16S rRNA processing protein RimM, at 4,964,841 to 4,965,377 _22915 PS417_22920: PS417_22920 - 30S ribosomal protein S16, at 4,965,383 to 4,965,634 _22920 PS417_22925: PS417_22925 - RNA-binding protein, at 4,965,885 to 4,967,261 _22925 Position (kb) 4965 4966Strain fitness (log2 ratio) -3 -2 -1 0 1at 4964.843 kb on - strandat 4965.778 kb on - strandat 4965.780 kb on - strandat 4965.881 kb on + strandat 4965.917 kb on + strandat 4965.917 kb on + strandat 4965.917 kb on + strandat 4965.917 kb on + strandat 4965.918 kb on - strandat 4965.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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4,964,843 - -1.4
4,965,778 - -0.9
4,965,780 - -0.1
4,965,881 + +1.2
4,965,917 + -1.1
4,965,917 + +0.6
4,965,917 + -0.8
4,965,917 + -3.1
4,965,918 - -1.1
4,965,918 - -1.4

Or see this region's nucleotide sequence