Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02250 and PS417_02255 overlap by 4 nucleotides PS417_02255 and PS417_02260 overlap by 1 nucleotides PS417_02260 and PS417_02265 are separated by 118 nucleotides
PS417_02250: PS417_02250 - heptose kinase, at 512,374 to 513,108
_02250
PS417_02255: PS417_02255 - lipopolysaccharide kinase, at 513,105 to 513,857
_02255
PS417_02260: PS417_02260 - serine/threonine protein kinase, at 513,857 to 515,296
_02260
PS417_02265: PS417_02265 - TonB-dependent receptor, at 515,415 to 517,499
_02265
Position (kb) 513
514
515
516 Strain fitness (log2 ratio) -2
-1
0
1
2 at 513.291 kb on + strand, within PS417_02255 at 513.291 kb on + strand, within PS417_02255 at 513.633 kb on + strand, within PS417_02255 at 515.333 kb on + strand at 515.348 kb on - strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.350 kb on + strand at 515.351 kb on - strand at 515.351 kb on - strand at 515.473 kb on + strand at 515.473 kb on + strand at 515.473 kb on + strand at 515.473 kb on + strand at 515.474 kb on - strand at 515.477 kb on - strand at 515.515 kb on + strand at 515.600 kb on + strand at 515.601 kb on - strand at 515.650 kb on + strand, within PS417_02265 at 515.650 kb on + strand, within PS417_02265 at 515.651 kb on - strand, within PS417_02265 at 515.991 kb on - strand, within PS417_02265 at 515.991 kb on - strand, within PS417_02265 at 516.012 kb on + strand, within PS417_02265 at 516.026 kb on - strand, within PS417_02265 at 516.136 kb on + strand, within PS417_02265 at 516.155 kb on + strand, within PS417_02265 at 516.163 kb on + strand, within PS417_02265
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 513,291 + PS417_02255 0.25 +1.4 513,291 + PS417_02255 0.25 -1.8 513,633 + PS417_02255 0.70 -0.1 515,333 + +1.2 515,348 - +0.2 515,350 + +0.2 515,350 + +0.7 515,350 + +0.5 515,350 + +2.6 515,350 + -0.5 515,351 - -0.9 515,351 - +0.3 515,473 + +1.4 515,473 + -1.0 515,473 + -0.5 515,473 + +0.6 515,474 - +0.8 515,477 - -0.5 515,515 + -2.3 515,600 + -1.5 515,601 - +0.3 515,650 + PS417_02265 0.11 -1.0 515,650 + PS417_02265 0.11 +0.7 515,651 - PS417_02265 0.11 -0.2 515,991 - PS417_02265 0.28 +0.1 515,991 - PS417_02265 0.28 +0.5 516,012 + PS417_02265 0.29 +0.6 516,026 - PS417_02265 0.29 -0.5 516,136 + PS417_02265 0.35 -0.2 516,155 + PS417_02265 0.35 +0.5 516,163 + PS417_02265 0.36 -0.5
Or see this region's nucleotide sequence