Strain Fitness in Pseudomonas simiae WCS417 around PS417_22420

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_22410 and PS417_22415 are separated by 6 nucleotidesPS417_22415 and PS417_22420 are separated by 55 nucleotidesPS417_22420 and PS417_22425 overlap by 4 nucleotides PS417_22410: PS417_22410 - hypothetical protein, at 4,855,195 to 4,856,028 _22410 PS417_22415: PS417_22415 - peptidoglycan-binding protein, at 4,856,035 to 4,856,535 _22415 PS417_22420: PS417_22420 - translocation protein TolB, at 4,856,591 to 4,857,892 _22420 PS417_22425: PS417_22425 - cell envelope biogenesis protein TolA, at 4,857,889 to 4,858,962 _22425 Position (kb) 4856 4857 4858Strain fitness (log2 ratio) -1 0 1 2at 4856.005 kb on + strandat 4856.037 kb on - strandat 4856.041 kb on - strandat 4856.041 kb on - strandat 4856.602 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
4,856,005 + -0.3
4,856,037 - +1.3
4,856,041 - -0.5
4,856,041 - +0.0
4,856,602 - +2.2

Or see this region's nucleotide sequence