Strain Fitness in Pseudomonas simiae WCS417 around PS417_02230

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02225 and PS417_02230 are separated by 54 nucleotidesPS417_02230 and PS417_02235 are separated by 1 nucleotides PS417_02225: PS417_02225 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase, at 505,356 to 508,295 _02225 PS417_02230: PS417_02230 - ADP-heptose--LPS heptosyltransferase, at 508,350 to 509,384 _02230 PS417_02235: PS417_02235 - ADP-heptose--LPS heptosyltransferase, at 509,386 to 510,447 _02235 Position (kb) 508 509 510Strain fitness (log2 ratio) -1 0 1 2at 508.301 kb on + strandat 508.319 kb on + strandat 508.319 kb on + strandat 508.347 kb on + strandat 508.347 kb on + strandat 508.347 kb on + strandat 509.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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508,301 + +0.2
508,319 + -0.0
508,319 + +0.6
508,347 + +0.2
508,347 + +1.8
508,347 + +1.5
509,382 + +0.8

Or see this region's nucleotide sequence