Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22280 and PS417_22285 are separated by 1 nucleotides PS417_22285 and PS417_22290 are separated by 106 nucleotides PS417_22290 and PS417_22295 are separated by 7 nucleotides PS417_22295 and PS417_22300 are separated by 263 nucleotides
PS417_22280: PS417_22280 - septation protein A, at 4,827,317 to 4,827,913
_22280
PS417_22285: PS417_22285 - hypothetical protein, at 4,827,915 to 4,828,214
_22285
PS417_22290: PS417_22290 - translation initiation factor 2, at 4,828,321 to 4,828,728
_22290
PS417_22295: PS417_22295 - chemotaxis protein CheY, at 4,828,736 to 4,829,413
_22295
PS417_22300: PS417_22300 - LTXXQ domain protein, at 4,829,677 to 4,830,141
_22300
Position (kb) 4828
4829 Strain fitness (log2 ratio) -1
0
1
2 at 4827.922 kb on - strand at 4828.152 kb on + strand, within PS417_22285 at 4828.152 kb on + strand, within PS417_22285 at 4828.153 kb on - strand, within PS417_22285 at 4828.153 kb on - strand, within PS417_22285 at 4828.153 kb on - strand, within PS417_22285 at 4828.171 kb on - strand, within PS417_22285 at 4828.247 kb on + strand at 4828.297 kb on - strand at 4828.297 kb on - strand at 4828.329 kb on - strand at 4828.329 kb on - strand at 4828.355 kb on + strand at 4828.519 kb on - strand, within PS417_22290 at 4828.755 kb on + strand at 4828.755 kb on + strand at 4828.756 kb on - strand at 4829.400 kb on - strand at 4829.400 kb on - strand at 4829.402 kb on + strand at 4829.402 kb on + strand at 4829.403 kb on - strand at 4829.403 kb on - strand at 4829.403 kb on - strand at 4829.552 kb on + strand at 4829.634 kb on + strand at 4829.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,827,922 - +0.8 4,828,152 + PS417_22285 0.79 +0.1 4,828,152 + PS417_22285 0.79 -1.4 4,828,153 - PS417_22285 0.79 +0.1 4,828,153 - PS417_22285 0.79 -0.0 4,828,153 - PS417_22285 0.79 -0.1 4,828,171 - PS417_22285 0.85 +0.2 4,828,247 + -1.0 4,828,297 - +0.9 4,828,297 - +0.4 4,828,329 - +0.1 4,828,329 - +1.7 4,828,355 + -0.5 4,828,519 - PS417_22290 0.49 -0.0 4,828,755 + +0.3 4,828,755 + +0.0 4,828,756 - +2.4 4,829,400 - +0.0 4,829,400 - +1.2 4,829,402 + +1.1 4,829,402 + +0.9 4,829,403 - +0.7 4,829,403 - +0.3 4,829,403 - +1.4 4,829,552 + -0.8 4,829,634 + +1.4 4,829,634 + -0.2
Or see this region's nucleotide sequence