Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02185 and PS417_02190 are separated by 21 nucleotides PS417_02190 and PS417_02200 are separated by 134 nucleotides PS417_02200 and PS417_02205 are separated by 138 nucleotides PS417_02205 and PS417_02210 are separated by 72 nucleotides
PS417_02185: PS417_02185 - type IV secretion protein Rhs, at 493,149 to 495,125
_02185
PS417_02190: PS417_02190 - hypothetical protein, at 495,147 to 495,830
_02190
PS417_02200: PS417_02200 - lactate dehydrogenase, at 495,965 to 496,801
_02200
PS417_02205: PS417_02205 - peptide methionine sulfoxide reductase, at 496,940 to 497,587
_02205
PS417_02210: PS417_02210 - diguanylate cyclase, at 497,660 to 500,353
_02210
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 495.307 kb on - strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.530 kb on - strand, within PS417_02190 at 495.625 kb on + strand, within PS417_02190 at 495.637 kb on + strand, within PS417_02190 at 495.720 kb on + strand, within PS417_02190 at 495.720 kb on + strand, within PS417_02190 at 495.763 kb on - strand at 495.937 kb on - strand at 496.810 kb on + strand at 496.811 kb on - strand at 496.863 kb on - strand at 496.863 kb on - strand at 496.863 kb on - strand at 496.863 kb on - strand at 496.870 kb on + strand at 496.873 kb on + strand at 496.874 kb on - strand at 496.941 kb on + strand at 496.981 kb on - strand at 497.005 kb on - strand, within PS417_02205 at 497.005 kb on - strand, within PS417_02205 at 497.016 kb on + strand, within PS417_02205 at 497.031 kb on + strand, within PS417_02205 at 497.031 kb on + strand, within PS417_02205 at 497.101 kb on - strand, within PS417_02205 at 497.151 kb on + strand, within PS417_02205 at 497.152 kb on - strand, within PS417_02205 at 497.166 kb on + strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.269 kb on - strand, within PS417_02205 at 497.322 kb on + strand, within PS417_02205 at 497.323 kb on - strand, within PS417_02205
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 495,307 - PS417_02190 0.23 +0.5 495,529 + PS417_02190 0.56 +1.8 495,529 + PS417_02190 0.56 +0.3 495,529 + PS417_02190 0.56 -0.1 495,529 + PS417_02190 0.56 +0.4 495,530 - PS417_02190 0.56 -1.2 495,625 + PS417_02190 0.70 -0.1 495,637 + PS417_02190 0.72 -1.5 495,720 + PS417_02190 0.84 -0.6 495,720 + PS417_02190 0.84 -0.1 495,763 - +0.7 495,937 - -0.5 496,810 + -1.9 496,811 - +0.6 496,863 - +0.8 496,863 - -0.9 496,863 - +0.5 496,863 - +2.1 496,870 + -0.2 496,873 + -0.3 496,874 - +0.8 496,941 + +0.4 496,981 - +1.0 497,005 - PS417_02205 0.10 +0.1 497,005 - PS417_02205 0.10 -2.1 497,016 + PS417_02205 0.12 -0.3 497,031 + PS417_02205 0.14 -0.6 497,031 + PS417_02205 0.14 +0.1 497,101 - PS417_02205 0.25 -2.3 497,151 + PS417_02205 0.33 +3.2 497,152 - PS417_02205 0.33 +0.6 497,166 + PS417_02205 0.35 +2.9 497,269 - PS417_02205 0.51 -0.1 497,269 - PS417_02205 0.51 -1.2 497,269 - PS417_02205 0.51 +1.8 497,269 - PS417_02205 0.51 +1.6 497,322 + PS417_02205 0.59 -1.7 497,323 - PS417_02205 0.59 -0.4
Or see this region's nucleotide sequence