Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21445 and PS417_21450 are separated by 126 nucleotides PS417_21450 and PS417_21455 are separated by 34 nucleotides PS417_21455 and PS417_21460 are separated by 13 nucleotides PS417_21460 and PS417_21465 are separated by 105 nucleotides
PS417_21445: PS417_21445 - malonyl CoA-ACP transacylase, at 4,656,126 to 4,657,064
_21445
PS417_21450: PS417_21450 - phosphate acyltransferase, at 4,657,191 to 4,658,171
_21450
PS417_21455: PS417_21455 - 50S ribosomal protein L32, at 4,658,206 to 4,658,388
_21455
PS417_21460: PS417_21460 - metal-binding protein, at 4,658,402 to 4,658,932
_21460
PS417_21465: PS417_21465 - septum formation inhibitor Maf, at 4,659,038 to 4,659,616
_21465
Position (kb) 4657
4658
4659 Strain fitness (log2 ratio) -1
0
1
2 at 4657.168 kb on + strand at 4657.168 kb on + strand at 4657.169 kb on - strand at 4657.169 kb on - strand at 4657.169 kb on - strand at 4657.576 kb on + strand, within PS417_21450 at 4657.880 kb on + strand, within PS417_21450 at 4658.947 kb on - strand at 4659.048 kb on + strand at 4659.049 kb on - strand at 4659.052 kb on - strand at 4659.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,657,168 + -0.4 4,657,168 + -0.3 4,657,169 - +0.8 4,657,169 - -0.3 4,657,169 - +0.1 4,657,576 + PS417_21450 0.39 -0.4 4,657,880 + PS417_21450 0.70 +0.5 4,658,947 - +2.2 4,659,048 + -1.0 4,659,049 - -0.8 4,659,052 - +1.5 4,659,052 - -0.2
Or see this region's nucleotide sequence