Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21410 and PS417_21415 overlap by 8 nucleotides PS417_21415 and PS417_21420 are separated by 19 nucleotides
PS417_21410: PS417_21410 - DNA polymerase III subunit delta', at 4,649,961 to 4,650,950
_21410
PS417_21415: PS417_21415 - thymidylate kinase, at 4,650,943 to 4,651,575
_21415
PS417_21420: PS417_21420 - aminodeoxychorismate lyase, at 4,651,595 to 4,652,740
_21420
Position (kb) 4650
4651
4652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4651.827 kb on + strand, within PS417_21420 at 4651.827 kb on + strand, within PS417_21420 at 4651.827 kb on + strand, within PS417_21420 at 4651.852 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.928 kb on - strand, within PS417_21420 at 4651.929 kb on + strand, within PS417_21420 at 4651.929 kb on + strand, within PS417_21420 at 4651.930 kb on - strand, within PS417_21420 at 4651.975 kb on - strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4652.018 kb on + strand, within PS417_21420 at 4652.124 kb on + strand, within PS417_21420 at 4652.136 kb on + strand, within PS417_21420 at 4652.177 kb on + strand, within PS417_21420 at 4652.178 kb on - strand, within PS417_21420 at 4652.244 kb on + strand, within PS417_21420 at 4652.244 kb on + strand, within PS417_21420 at 4652.245 kb on - strand, within PS417_21420 at 4652.245 kb on - strand, within PS417_21420 at 4652.245 kb on - strand at 4652.245 kb on - strand, within PS417_21420 at 4652.409 kb on + strand, within PS417_21420 at 4652.410 kb on - strand, within PS417_21420 at 4652.435 kb on + strand, within PS417_21420 at 4652.478 kb on + strand, within PS417_21420 at 4652.524 kb on - strand, within PS417_21420
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,651,827 + PS417_21420 0.20 +0.5 4,651,827 + PS417_21420 0.20 -2.5 4,651,827 + PS417_21420 0.20 -1.4 4,651,852 + PS417_21420 0.22 -1.6 4,651,920 + PS417_21420 0.28 +1.4 4,651,920 + PS417_21420 0.28 -1.4 4,651,920 + PS417_21420 0.28 -1.6 4,651,920 + PS417_21420 0.28 -0.7 4,651,920 + PS417_21420 0.28 -3.0 4,651,920 + PS417_21420 0.28 -2.3 4,651,920 + PS417_21420 0.28 -0.3 4,651,920 + PS417_21420 0.28 -3.7 4,651,920 + PS417_21420 0.28 -2.4 4,651,920 + PS417_21420 0.28 -1.4 4,651,920 + PS417_21420 0.28 -0.4 4,651,921 - PS417_21420 0.28 -2.1 4,651,921 - PS417_21420 0.28 -0.8 4,651,921 - PS417_21420 0.28 -2.2 4,651,921 - PS417_21420 0.28 -0.5 4,651,921 - PS417_21420 0.28 -1.6 4,651,928 - PS417_21420 0.29 -2.0 4,651,929 + PS417_21420 0.29 -1.1 4,651,929 + PS417_21420 0.29 -0.8 4,651,930 - PS417_21420 0.29 -0.3 4,651,975 - PS417_21420 0.33 -2.9 4,651,992 + PS417_21420 0.35 -1.6 4,651,992 + PS417_21420 0.35 -1.0 4,651,992 + PS417_21420 0.35 -3.5 4,651,993 - PS417_21420 0.35 -1.2 4,651,993 - PS417_21420 0.35 -1.8 4,651,993 - PS417_21420 0.35 -1.0 4,652,018 + PS417_21420 0.37 +0.5 4,652,124 + PS417_21420 0.46 -1.6 4,652,136 + PS417_21420 0.47 -1.2 4,652,177 + PS417_21420 0.51 -2.2 4,652,178 - PS417_21420 0.51 -0.7 4,652,244 + PS417_21420 0.57 -1.8 4,652,244 + PS417_21420 0.57 -0.5 4,652,245 - PS417_21420 0.57 -1.0 4,652,245 - PS417_21420 0.57 -1.6 4,652,245 - +1.9 4,652,245 - PS417_21420 0.57 -1.9 4,652,409 + PS417_21420 0.71 +0.3 4,652,410 - PS417_21420 0.71 -1.1 4,652,435 + PS417_21420 0.73 +0.5 4,652,478 + PS417_21420 0.77 -3.1 4,652,524 - PS417_21420 0.81 -1.8
Or see this region's nucleotide sequence