Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02100 and PS417_02105 overlap by 4 nucleotides PS417_02105 and PS417_02110 are separated by 9 nucleotides PS417_02110 and PS417_02115 overlap by 23 nucleotides PS417_02115 and PS417_02120 overlap by 25 nucleotides PS417_02120 and PS417_02125 are separated by 304 nucleotides
PS417_02100: PS417_02100 - membrane protein, at 470,726 to 471,271
_02100
PS417_02105: PS417_02105 - acyl carrier protein, at 471,268 to 471,522
_02105
PS417_02110: PS417_02110 - acyl carrier protein, at 471,532 to 471,801
_02110
PS417_02115: PS417_02115 - acyltransferase, at 471,779 to 472,591
_02115
PS417_02120: PS417_02120 - 3-oxoacyl-ACP synthase, at 472,567 to 473,286
_02120
PS417_02125: PS417_02125 - cobalamin biosynthesis protein CobQ, at 473,591 to 474,361
_02125
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1
2
3 at 470.811 kb on + strand, within PS417_02100 at 470.811 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.913 kb on + strand, within PS417_02100 at 470.914 kb on - strand, within PS417_02100 at 470.983 kb on - strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.210 kb on + strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.211 kb on - strand, within PS417_02100 at 471.294 kb on - strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.375 kb on + strand, within PS417_02105 at 471.504 kb on + strand at 471.769 kb on + strand, within PS417_02110 at 471.825 kb on + strand at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.899 kb on + strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.900 kb on - strand, within PS417_02115 at 471.901 kb on + strand, within PS417_02115 at 472.172 kb on - strand, within PS417_02115 at 472.174 kb on - strand, within PS417_02115 at 472.409 kb on - strand, within PS417_02115 at 472.409 kb on - strand, within PS417_02115 at 472.546 kb on - strand at 472.546 kb on - strand at 473.296 kb on - strand at 473.397 kb on - strand at 473.403 kb on + strand at 473.403 kb on + strand at 473.448 kb on + strand at 473.449 kb on - strand at 473.554 kb on + strand at 473.575 kb on - strand at 473.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 470,811 + PS417_02100 0.16 -0.3 470,811 + PS417_02100 0.16 -0.2 470,913 + PS417_02100 0.34 +0.7 470,913 + PS417_02100 0.34 +0.8 470,914 - PS417_02100 0.34 +1.6 470,983 - PS417_02100 0.47 -0.4 471,210 + PS417_02100 0.89 -0.2 471,210 + PS417_02100 0.89 -0.0 471,211 - PS417_02100 0.89 -0.6 471,211 - PS417_02100 0.89 +0.5 471,294 - PS417_02105 0.10 +1.2 471,375 + PS417_02105 0.42 -0.7 471,375 + PS417_02105 0.42 -0.2 471,504 + -0.1 471,769 + PS417_02110 0.88 -1.1 471,825 + -0.9 471,899 + PS417_02115 0.15 +0.8 471,899 + PS417_02115 0.15 -0.3 471,899 + PS417_02115 0.15 -0.9 471,900 - PS417_02115 0.15 +3.0 471,900 - PS417_02115 0.15 +0.9 471,901 + PS417_02115 0.15 -0.0 472,172 - PS417_02115 0.48 -0.1 472,174 - PS417_02115 0.49 +0.5 472,409 - PS417_02115 0.77 +0.2 472,409 - PS417_02115 0.77 -0.9 472,546 - +1.0 472,546 - -0.1 473,296 - -0.1 473,397 - -0.2 473,403 + +1.0 473,403 + +0.7 473,448 + -0.4 473,449 - +0.1 473,554 + +0.4 473,575 - +1.0 473,575 - +0.8
Or see this region's nucleotide sequence