Strain Fitness in Pseudomonas simiae WCS417 around PS417_21075

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21070 and PS417_21075 are separated by 197 nucleotidesPS417_21075 and PS417_21080 are separated by 40 nucleotidesPS417_21080 and PS417_21085 overlap by 1 nucleotides PS417_21070: PS417_21070 - aconitate hydratase, at 4,584,636 to 4,587,230 _21070 PS417_21075: PS417_21075 - methylcitrate synthase, at 4,587,428 to 4,588,555 _21075 PS417_21080: PS417_21080 - 2-methylisocitrate lyase, at 4,588,596 to 4,589,489 _21080 PS417_21085: PS417_21085 - GntR family transcriptional regulator, at 4,589,489 to 4,590,199 _21085 Position (kb) 4587 4588 4589Strain fitness (log2 ratio) -1 0 1at 4588.579 kb on - strandat 4588.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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4,588,579 - +0.1
4,588,598 - -0.5

Or see this region's nucleotide sequence