Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21040 and PS417_21045 are separated by 15 nucleotides PS417_21045 and PS417_21050 are separated by 37 nucleotides PS417_21050 and PS417_21055 are separated by 2 nucleotides PS417_21055 and PS417_21060 are separated by 136 nucleotides
PS417_21040: PS417_21040 - sulfurylase, at 4,577,142 to 4,579,004
_21040
PS417_21045: PS417_21045 - cysteine synthase, at 4,579,020 to 4,579,934
_21045
PS417_21050: PS417_21050 - serine acetyltransferase, at 4,579,972 to 4,580,964
_21050
PS417_21055: PS417_21055 - threonyl-tRNA synthetase, at 4,580,967 to 4,581,695
_21055
PS417_21060: PS417_21060 - 2-methylcitrate dehydratase, at 4,581,832 to 4,583,316
_21060
Position (kb) 4579
4580
4581 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4578.999 kb on + strand at 4578.999 kb on + strand at 4579.000 kb on - strand at 4579.028 kb on + strand at 4579.029 kb on - strand at 4579.029 kb on - strand at 4579.029 kb on - strand at 4579.276 kb on + strand, within PS417_21045 at 4579.276 kb on + strand, within PS417_21045 at 4579.276 kb on + strand, within PS417_21045 at 4579.277 kb on - strand, within PS417_21045 at 4579.277 kb on - strand, within PS417_21045 at 4579.277 kb on - strand, within PS417_21045 at 4579.314 kb on + strand, within PS417_21045 at 4579.315 kb on - strand, within PS417_21045 at 4579.315 kb on - strand, within PS417_21045 at 4579.315 kb on - strand, within PS417_21045 at 4579.315 kb on - strand, within PS417_21045 at 4579.315 kb on - strand, within PS417_21045 at 4579.346 kb on - strand, within PS417_21045 at 4579.438 kb on - strand, within PS417_21045 at 4579.539 kb on + strand, within PS417_21045 at 4579.539 kb on + strand, within PS417_21045 at 4579.540 kb on - strand, within PS417_21045 at 4579.571 kb on + strand, within PS417_21045 at 4579.897 kb on - strand at 4579.897 kb on - strand at 4579.915 kb on - strand at 4579.915 kb on - strand at 4579.915 kb on - strand at 4580.132 kb on - strand, within PS417_21050 at 4580.179 kb on + strand, within PS417_21050 at 4580.180 kb on - strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.251 kb on - strand, within PS417_21050 at 4580.251 kb on - strand, within PS417_21050 at 4580.407 kb on + strand, within PS417_21050 at 4580.407 kb on + strand, within PS417_21050 at 4580.408 kb on - strand, within PS417_21050 at 4580.408 kb on - strand, within PS417_21050 at 4580.408 kb on - strand, within PS417_21050 at 4580.498 kb on + strand, within PS417_21050 at 4580.499 kb on - strand, within PS417_21050 at 4580.524 kb on + strand, within PS417_21050 at 4580.525 kb on - strand, within PS417_21050 at 4580.525 kb on - strand, within PS417_21050 at 4580.656 kb on + strand, within PS417_21050 at 4580.657 kb on - strand, within PS417_21050 at 4580.719 kb on - strand, within PS417_21050 at 4581.016 kb on - strand at 4581.077 kb on + strand, within PS417_21055 at 4581.077 kb on + strand, within PS417_21055 at 4581.077 kb on + strand, within PS417_21055 at 4581.241 kb on + strand, within PS417_21055 at 4581.247 kb on + strand, within PS417_21055 at 4581.248 kb on - strand, within PS417_21055 at 4581.801 kb on - strand at 4581.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,578,999 + +0.4 4,578,999 + -0.4 4,579,000 - +0.8 4,579,028 + +2.9 4,579,029 - +2.7 4,579,029 - +2.7 4,579,029 - +1.6 4,579,276 + PS417_21045 0.28 -1.1 4,579,276 + PS417_21045 0.28 +0.9 4,579,276 + PS417_21045 0.28 -0.2 4,579,277 - PS417_21045 0.28 +0.0 4,579,277 - PS417_21045 0.28 +3.2 4,579,277 - PS417_21045 0.28 +1.6 4,579,314 + PS417_21045 0.32 -0.6 4,579,315 - PS417_21045 0.32 +2.3 4,579,315 - PS417_21045 0.32 +1.3 4,579,315 - PS417_21045 0.32 +2.8 4,579,315 - PS417_21045 0.32 +2.0 4,579,315 - PS417_21045 0.32 +1.1 4,579,346 - PS417_21045 0.36 +3.2 4,579,438 - PS417_21045 0.46 +1.7 4,579,539 + PS417_21045 0.57 -0.5 4,579,539 + PS417_21045 0.57 -0.2 4,579,540 - PS417_21045 0.57 +2.0 4,579,571 + PS417_21045 0.60 -1.4 4,579,897 - +1.8 4,579,897 - +3.1 4,579,915 - +1.0 4,579,915 - +2.6 4,579,915 - +3.7 4,580,132 - PS417_21050 0.16 +2.5 4,580,179 + PS417_21050 0.21 -0.1 4,580,180 - PS417_21050 0.21 +3.0 4,580,203 + PS417_21050 0.23 +0.8 4,580,203 + PS417_21050 0.23 +1.3 4,580,203 + PS417_21050 0.23 +0.4 4,580,203 + PS417_21050 0.23 +0.0 4,580,203 + PS417_21050 0.23 +1.1 4,580,204 - PS417_21050 0.23 +2.5 4,580,204 - PS417_21050 0.23 +3.2 4,580,204 - PS417_21050 0.23 +2.9 4,580,204 - PS417_21050 0.23 +0.8 4,580,251 - PS417_21050 0.28 +4.1 4,580,251 - PS417_21050 0.28 +2.7 4,580,407 + PS417_21050 0.44 -0.1 4,580,407 + PS417_21050 0.44 +1.5 4,580,408 - PS417_21050 0.44 +0.6 4,580,408 - PS417_21050 0.44 +3.7 4,580,408 - PS417_21050 0.44 +0.7 4,580,498 + PS417_21050 0.53 +0.6 4,580,499 - PS417_21050 0.53 +3.1 4,580,524 + PS417_21050 0.56 -0.8 4,580,525 - PS417_21050 0.56 +2.2 4,580,525 - PS417_21050 0.56 +3.0 4,580,656 + PS417_21050 0.69 -0.9 4,580,657 - PS417_21050 0.69 +1.6 4,580,719 - PS417_21050 0.75 +0.3 4,581,016 - +3.6 4,581,077 + PS417_21055 0.15 +1.4 4,581,077 + PS417_21055 0.15 +1.8 4,581,077 + PS417_21055 0.15 +1.9 4,581,241 + PS417_21055 0.38 +2.2 4,581,247 + PS417_21055 0.38 +2.0 4,581,248 - PS417_21055 0.39 +1.6 4,581,801 - +0.2 4,581,834 - +0.0
Or see this region's nucleotide sequence