Strain Fitness in Pseudomonas simiae WCS417 around PS417_20770

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20760 and PS417_20765 are separated by 22 nucleotidesPS417_20765 and PS417_20770 overlap by 8 nucleotidesPS417_20770 and PS417_20775 are separated by 103 nucleotides PS417_20760: PS417_20760 - carbonate dehydratase, at 4,510,119 to 4,512,569 _20760 PS417_20765: PS417_20765 - cytochrome oxidase maturation protein Cbb3, at 4,512,592 to 4,512,804 _20765 PS417_20770: PS417_20770 - cytochrome biogenesis protein, at 4,512,797 to 4,513,480 _20770 PS417_20775: PS417_20775 - coproporphyrinogen III oxidase, at 4,513,584 to 4,514,966 _20775 Position (kb) 4512 4513 4514Strain fitness (log2 ratio) -2 -1 0 1at 4513.496 kb on - strandat 4513.752 kb on + strand, within PS417_20775at 4513.753 kb on - strand, within PS417_20775at 4513.753 kb on - strandat 4513.786 kb on - strand, within PS417_20775at 4514.445 kb on + strand, within PS417_20775

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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4,513,496 - +0.5
4,513,752 + PS417_20775 0.12 +1.0
4,513,753 - PS417_20775 0.12 -0.6
4,513,753 - +0.3
4,513,786 - PS417_20775 0.15 -1.8
4,514,445 + PS417_20775 0.62 -0.2

Or see this region's nucleotide sequence