Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20750 and PS417_20755 are separated by 16 nucleotides PS417_20755 and PS417_20760 are separated by 115 nucleotides PS417_20760 and PS417_20765 are separated by 22 nucleotides PS417_20765 and PS417_20770 overlap by 8 nucleotides
PS417_20750: PS417_20750 - (Fe-S)-binding protein, at 4,508,020 to 4,509,447
_20750
PS417_20755: PS417_20755 - membrane protein, at 4,509,464 to 4,510,003
_20755
PS417_20760: PS417_20760 - carbonate dehydratase, at 4,510,119 to 4,512,569
_20760
PS417_20765: PS417_20765 - cytochrome oxidase maturation protein Cbb3, at 4,512,592 to 4,512,804
_20765
PS417_20770: PS417_20770 - cytochrome biogenesis protein, at 4,512,797 to 4,513,480
_20770
Position (kb) 4510
4511
4512
4513 Strain fitness (log2 ratio) -1
0
1 at 4509.608 kb on + strand, within PS417_20755 at 4509.608 kb on + strand, within PS417_20755 at 4509.608 kb on + strand, within PS417_20755 at 4509.608 kb on + strand, within PS417_20755 at 4509.611 kb on + strand, within PS417_20755 at 4510.140 kb on + strand at 4513.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,509,608 + PS417_20755 0.27 -1.5 4,509,608 + PS417_20755 0.27 -0.4 4,509,608 + PS417_20755 0.27 +0.2 4,509,608 + PS417_20755 0.27 +0.3 4,509,611 + PS417_20755 0.27 +0.3 4,510,140 + -0.5 4,513,496 - +0.5
Or see this region's nucleotide sequence