Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20720 and PS417_20725 overlap by 1 nucleotides PS417_20725 and PS417_20730 are separated by 6 nucleotides PS417_20730 and PS417_20735 overlap by 4 nucleotides PS417_20735 and PS417_20740 are separated by 172 nucleotides PS417_20740 and PS417_20745 overlap by 1 nucleotides
PS417_20720: PS417_20720 - cbb3-type cytochrome c oxidase subunit I, at 4,503,759 to 4,505,201
_20720
PS417_20725: PS417_20725 - cbb3-type cytochrome c oxidase subunit II, at 4,505,201 to 4,505,809
_20725
PS417_20730: PS417_20730 - cytochrome oxidase, at 4,505,816 to 4,506,001
_20730
PS417_20735: PS417_20735 - cytochrome Cbb3, at 4,505,998 to 4,506,975
_20735
PS417_20740: PS417_20740 - prevent-host-death protein, at 4,507,148 to 4,507,402
_20740
PS417_20745: PS417_20745 - twitching motility protein PilT, at 4,507,402 to 4,507,812
_20745
Position (kb) 4505
4506
4507 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 4505.061 kb on + strand at 4505.118 kb on + strand at 4505.119 kb on - strand at 4505.376 kb on - strand, within PS417_20725 at 4505.573 kb on + strand, within PS417_20725 at 4505.983 kb on + strand at 4506.020 kb on - strand at 4506.146 kb on - strand, within PS417_20735 at 4506.818 kb on - strand, within PS417_20735 at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.935 kb on - strand at 4506.973 kb on + strand at 4507.075 kb on - strand at 4507.114 kb on + strand at 4507.260 kb on + strand, within PS417_20740 at 4507.260 kb on + strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.405 kb on + strand at 4507.405 kb on + strand at 4507.406 kb on - strand at 4507.406 kb on - strand at 4507.425 kb on + strand at 4507.426 kb on - strand at 4507.426 kb on - strand at 4507.441 kb on - strand at 4507.515 kb on + strand, within PS417_20745 at 4507.515 kb on + strand, within PS417_20745 at 4507.516 kb on - strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.608 kb on - strand, within PS417_20745 at 4507.608 kb on - strand, within PS417_20745 at 4507.728 kb on - strand, within PS417_20745 at 4507.728 kb on - strand, within PS417_20745 at 4507.728 kb on - strand, within PS417_20745 at 4507.730 kb on + strand, within PS417_20745 at 4507.731 kb on - strand, within PS417_20745 at 4507.731 kb on - strand, within PS417_20745 at 4507.838 kb on + strand at 4507.919 kb on + strand at 4507.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,505,061 + +1.7 4,505,118 + +1.5 4,505,119 - -0.8 4,505,376 - PS417_20725 0.29 -0.8 4,505,573 + PS417_20725 0.61 -2.0 4,505,983 + +0.2 4,506,020 - +1.3 4,506,146 - PS417_20735 0.15 +8.2 4,506,818 - PS417_20735 0.84 +1.4 4,506,929 - +0.6 4,506,929 - -2.0 4,506,929 - +3.1 4,506,935 - +0.3 4,506,973 + -0.8 4,507,075 - +0.4 4,507,114 + -0.3 4,507,260 + PS417_20740 0.44 +1.1 4,507,260 + PS417_20740 0.44 -0.1 4,507,261 - PS417_20740 0.44 -0.6 4,507,261 - PS417_20740 0.44 -1.8 4,507,261 - PS417_20740 0.44 -1.2 4,507,261 - PS417_20740 0.44 -0.4 4,507,267 - PS417_20740 0.47 -0.3 4,507,267 - PS417_20740 0.47 +4.7 4,507,267 - PS417_20740 0.47 -1.7 4,507,267 - PS417_20740 0.47 -0.5 4,507,405 + -2.1 4,507,405 + -0.0 4,507,406 - +0.8 4,507,406 - +0.5 4,507,425 + -0.2 4,507,426 - +0.7 4,507,426 - +0.2 4,507,441 - -0.1 4,507,515 + PS417_20745 0.27 -0.1 4,507,515 + PS417_20745 0.27 -0.7 4,507,516 - PS417_20745 0.28 -1.0 4,507,607 + PS417_20745 0.50 +0.8 4,507,607 + PS417_20745 0.50 +0.8 4,507,607 + PS417_20745 0.50 +0.4 4,507,607 + PS417_20745 0.50 -0.5 4,507,608 - PS417_20745 0.50 +0.4 4,507,608 - PS417_20745 0.50 -1.0 4,507,728 - PS417_20745 0.79 -0.6 4,507,728 - PS417_20745 0.79 -0.0 4,507,728 - PS417_20745 0.79 -0.2 4,507,730 + PS417_20745 0.80 +1.4 4,507,731 - PS417_20745 0.80 +1.5 4,507,731 - PS417_20745 0.80 +1.0 4,507,838 + -0.5 4,507,919 + +0.5 4,507,933 + -0.3
Or see this region's nucleotide sequence