Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00190 and PS417_00195 are separated by 9 nucleotides PS417_00195 and PS417_00200 are separated by 156 nucleotides PS417_00200 and PS417_00205 are separated by 115 nucleotides PS417_00205 and PS417_00210 are separated by 59 nucleotides
PS417_00190: PS417_00190 - LysR family transcriptional regulator, at 40,050 to 40,946
_00190
PS417_00195: PS417_00195 - hypothetical protein, at 40,956 to 41,282
_00195
PS417_00200: PS417_00200 - hypothetical protein, at 41,439 to 41,654
_00200
PS417_00205: PS417_00205 - hypothetical protein, at 41,770 to 41,997
_00205
PS417_00210: PS417_00210 - hypothetical protein, at 42,057 to 43,058
_00210
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 40.927 kb on + strand at 40.928 kb on - strand at 40.940 kb on + strand at 40.940 kb on + strand at 40.941 kb on - strand at 40.944 kb on + strand at 40.945 kb on - strand at 40.957 kb on + strand at 40.981 kb on + strand at 40.982 kb on - strand at 41.047 kb on + strand, within PS417_00195 at 41.047 kb on + strand, within PS417_00195 at 41.047 kb on + strand, within PS417_00195 at 41.047 kb on + strand, within PS417_00195 at 41.048 kb on - strand, within PS417_00195 at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.317 kb on - strand at 41.317 kb on - strand at 41.320 kb on + strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.355 kb on - strand at 41.390 kb on + strand at 41.417 kb on + strand at 41.417 kb on + strand at 41.458 kb on - strand at 41.458 kb on - strand at 41.648 kb on + strand at 41.648 kb on + strand at 41.649 kb on - strand at 41.702 kb on - strand at 41.745 kb on + strand at 41.764 kb on + strand at 41.764 kb on + strand at 41.793 kb on - strand, within PS417_00205 at 42.347 kb on - strand, within PS417_00210 at 42.347 kb on - strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.535 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.934 kb on + strand, within PS417_00210
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 40,927 + -0.3 40,928 - -0.3 40,940 + -0.9 40,940 + +0.3 40,941 - -0.2 40,944 + +1.4 40,945 - +2.3 40,957 + -0.5 40,981 + +3.4 40,982 - +0.7 41,047 + PS417_00195 0.28 +0.7 41,047 + PS417_00195 0.28 -1.2 41,047 + PS417_00195 0.28 +2.2 41,047 + PS417_00195 0.28 +0.4 41,048 - PS417_00195 0.28 -1.4 41,316 + -0.5 41,316 + +0.1 41,316 + -0.2 41,316 + +0.0 41,316 + +1.0 41,316 + +0.6 41,317 - -1.6 41,317 - -0.9 41,320 + -1.5 41,351 - +1.3 41,351 - -0.4 41,351 - +0.3 41,355 - +1.2 41,390 + -1.2 41,417 + -1.0 41,417 + +3.8 41,458 - +0.1 41,458 - -0.3 41,648 + +0.8 41,648 + -0.1 41,649 - -0.8 41,702 - +1.4 41,745 + -1.9 41,764 + +0.0 41,764 + +9.9 41,793 - PS417_00205 0.10 -0.0 42,347 - PS417_00210 0.29 +1.0 42,347 - PS417_00210 0.29 +0.2 42,534 + PS417_00210 0.48 -1.1 42,534 + PS417_00210 0.48 +0.4 42,534 + PS417_00210 0.48 -0.0 42,535 - PS417_00210 0.48 -1.6 42,623 - PS417_00210 0.56 +0.3 42,623 - PS417_00210 0.56 +1.0 42,902 + PS417_00210 0.84 -0.7 42,902 + PS417_00210 0.84 -1.6 42,903 - PS417_00210 0.84 -0.2 42,903 - PS417_00210 0.84 -0.9 42,934 + PS417_00210 0.88 +0.5
Or see this region's nucleotide sequence