Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20140 and PS417_20145 are separated by 25 nucleotides PS417_20145 and PS417_20150 are separated by 91 nucleotides PS417_20150 and PS417_20155 are separated by 119 nucleotides
PS417_20140: PS417_20140 - nucleoprotein/polynucleotide-associated enzyme, at 4,370,965 to 4,371,510
_20140
PS417_20145: PS417_20145 - nucleoside triphosphate hydrolase, at 4,371,536 to 4,372,369
_20145
PS417_20150: PS417_20150 - (p)ppGpp synthetase, at 4,372,461 to 4,374,704
_20150
PS417_20155: PS417_20155 - 23S rRNA methyltransferase, at 4,374,824 to 4,376,176
_20155
Position (kb) 4372
4373
4374
4375 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4371.518 kb on - strand at 4371.525 kb on + strand at 4371.525 kb on + strand at 4371.617 kb on + strand at 4371.890 kb on + strand, within PS417_20145 at 4371.891 kb on - strand, within PS417_20145 at 4372.053 kb on + strand, within PS417_20145 at 4372.053 kb on + strand, within PS417_20145 at 4372.105 kb on + strand, within PS417_20145 at 4372.105 kb on + strand, within PS417_20145 at 4372.105 kb on + strand, within PS417_20145 at 4372.106 kb on - strand, within PS417_20145 at 4372.165 kb on - strand, within PS417_20145 at 4372.165 kb on - strand at 4372.167 kb on + strand, within PS417_20145 at 4372.167 kb on + strand, within PS417_20145 at 4372.168 kb on - strand, within PS417_20145 at 4372.284 kb on + strand, within PS417_20145 at 4372.284 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.366 kb on - strand at 4372.366 kb on - strand at 4372.375 kb on + strand at 4372.375 kb on + strand at 4372.389 kb on + strand at 4372.389 kb on + strand at 4372.389 kb on + strand at 4374.712 kb on - strand at 4374.762 kb on + strand at 4374.762 kb on + strand at 4374.762 kb on + strand at 4374.763 kb on - strand at 4374.763 kb on - strand at 4374.825 kb on + strand at 4374.839 kb on + strand at 4374.966 kb on + strand, within PS417_20155 at 4374.966 kb on + strand, within PS417_20155 at 4374.966 kb on + strand, within PS417_20155 at 4374.966 kb on + strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4374.967 kb on - strand, within PS417_20155 at 4375.120 kb on + strand, within PS417_20155 at 4375.505 kb on + strand, within PS417_20155 at 4375.505 kb on + strand, within PS417_20155 at 4375.506 kb on - strand, within PS417_20155 at 4375.506 kb on - strand, within PS417_20155 at 4375.508 kb on - strand, within PS417_20155 at 4375.508 kb on - strand, within PS417_20155 at 4375.534 kb on + strand, within PS417_20155 at 4375.534 kb on + strand, within PS417_20155 at 4375.535 kb on - strand, within PS417_20155 at 4375.535 kb on - strand, within PS417_20155
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,371,518 - -1.5 4,371,525 + -0.5 4,371,525 + -0.9 4,371,617 + -1.5 4,371,890 + PS417_20145 0.42 -2.0 4,371,891 - PS417_20145 0.43 -1.1 4,372,053 + PS417_20145 0.62 +0.5 4,372,053 + PS417_20145 0.62 -0.9 4,372,105 + PS417_20145 0.68 +1.0 4,372,105 + PS417_20145 0.68 -0.2 4,372,105 + PS417_20145 0.68 -0.6 4,372,106 - PS417_20145 0.68 +0.3 4,372,165 - PS417_20145 0.75 +1.6 4,372,165 - +0.9 4,372,167 + PS417_20145 0.76 +0.0 4,372,167 + PS417_20145 0.76 +0.8 4,372,168 - PS417_20145 0.76 -1.5 4,372,284 + PS417_20145 0.90 +0.9 4,372,284 + +2.2 4,372,365 + -0.2 4,372,365 + -0.6 4,372,365 + -1.6 4,372,365 + -0.6 4,372,365 + -0.2 4,372,366 - -1.3 4,372,366 - -0.2 4,372,375 + +1.0 4,372,375 + -0.7 4,372,389 + +1.0 4,372,389 + +4.8 4,372,389 + +0.5 4,374,712 - -1.6 4,374,762 + +1.9 4,374,762 + -0.7 4,374,762 + -1.1 4,374,763 - -0.5 4,374,763 - +0.0 4,374,825 + -0.5 4,374,839 + -0.9 4,374,966 + PS417_20155 0.10 +0.2 4,374,966 + PS417_20155 0.10 +0.6 4,374,966 + PS417_20155 0.10 -1.0 4,374,966 + PS417_20155 0.10 +0.4 4,374,967 - PS417_20155 0.11 +2.1 4,374,967 - PS417_20155 0.11 -0.2 4,374,967 - PS417_20155 0.11 +0.8 4,374,967 - PS417_20155 0.11 +0.9 4,374,967 - PS417_20155 0.11 -2.1 4,375,120 + PS417_20155 0.22 -0.2 4,375,505 + PS417_20155 0.50 -0.4 4,375,505 + PS417_20155 0.50 -1.7 4,375,506 - PS417_20155 0.50 +3.0 4,375,506 - PS417_20155 0.50 -1.9 4,375,508 - PS417_20155 0.51 -0.2 4,375,508 - PS417_20155 0.51 +1.2 4,375,534 + PS417_20155 0.52 +1.1 4,375,534 + PS417_20155 0.52 -0.3 4,375,535 - PS417_20155 0.53 +1.4 4,375,535 - PS417_20155 0.53 +1.8
Or see this region's nucleotide sequence