Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19515 and PS417_19520 overlap by 4 nucleotides PS417_19520 and PS417_19525 are separated by 161 nucleotides PS417_19525 and PS417_19530 are separated by 0 nucleotides PS417_19530 and PS417_19535 overlap by 25 nucleotides
PS417_19515: PS417_19515 - histidine kinase, at 4,231,091 to 4,232,413
_19515
PS417_19520: PS417_19520 - transcriptional regulator, at 4,232,410 to 4,233,090
_19520
PS417_19525: PS417_19525 - thiol:disulfide interchange protein, at 4,233,252 to 4,234,979
_19525
PS417_19530: PS417_19530 - peroxiredoxin, at 4,234,980 to 4,235,831
_19530
PS417_19535: PS417_19535 - dihydroneopterin aldolase, at 4,235,807 to 4,236,568
_19535
Position (kb) 4233
4234
4235 Strain fitness (log2 ratio) -2
-1
0
1 at 4232.556 kb on - strand, within PS417_19520 at 4232.798 kb on + strand, within PS417_19520 at 4232.799 kb on - strand, within PS417_19520 at 4233.082 kb on + strand at 4233.104 kb on + strand at 4233.105 kb on - strand at 4233.175 kb on + strand at 4233.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,232,556 - PS417_19520 0.21 +0.7 4,232,798 + PS417_19520 0.57 +1.6 4,232,799 - PS417_19520 0.57 -1.9 4,233,082 + +0.6 4,233,104 + +0.0 4,233,105 - +1.2 4,233,175 + +0.1 4,233,180 + -0.6
Or see this region's nucleotide sequence