Strain Fitness in Pseudomonas simiae WCS417 around PS417_01930

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01920 and PS417_01925 are separated by 257 nucleotidesPS417_01925 and PS417_01930 are separated by 1 nucleotidesPS417_01930 and PS417_01935 are separated by 110 nucleotides PS417_01920: PS417_01920 - ATP-dependent protease subunit HslV, at 425,048 to 425,578 _01920 PS417_01925: PS417_01925 - cell division protein, at 425,836 to 426,537 _01925 PS417_01930: PS417_01930 - arginyl-tRNA synthetase, at 426,539 to 428,275 _01930 PS417_01935: PS417_01935 - primosomal protein N', at 428,386 to 430,605 _01935 Position (kb) 426 427 428 429Strain fitness (log2 ratio) -1 0 1 2 3 4at 425.684 kb on + strandat 425.684 kb on + strandat 425.684 kb on + strandat 425.685 kb on - strandat 425.764 kb on + strandat 425.765 kb on - strandat 425.781 kb on - strandat 425.781 kb on - strandat 425.787 kb on + strandat 428.375 kb on + strandat 428.387 kb on + strandat 428.388 kb on - strandat 428.388 kb on - strandat 428.388 kb on - strandat 428.390 kb on + strandat 428.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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425,684 + +0.3
425,684 + -0.7
425,684 + +1.3
425,685 - -1.4
425,764 + +0.5
425,765 - -0.3
425,781 - +1.3
425,781 - +3.8
425,787 + -0.0
428,375 + -0.3
428,387 + +0.1
428,388 - -1.3
428,388 - -0.9
428,388 - +1.4
428,390 + -1.2
428,391 - -1.0

Or see this region's nucleotide sequence