Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19335 and PS417_19340 are separated by 142 nucleotides PS417_19340 and PS417_19345 are separated by 75 nucleotides PS417_19345 and PS417_19350 are separated by 78 nucleotides PS417_19350 and PS417_19355 are separated by 101 nucleotides
PS417_19335: PS417_19335 - isochorismatase, at 4,193,212 to 4,193,802
_19335
PS417_19340: PS417_19340 - hypothetical protein, at 4,193,945 to 4,194,265
_19340
PS417_19345: PS417_19345 - DNA mismatch repair protein MutS, at 4,194,341 to 4,194,898
_19345
PS417_19350: PS417_19350 - GTP cyclohydrolase, at 4,194,977 to 4,195,522
_19350
PS417_19355: PS417_19355 - glutaredoxin, at 4,195,624 to 4,195,995
_19355
Position (kb) 4194
4195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4193.423 kb on + strand, within PS417_19335 at 4193.423 kb on + strand, within PS417_19335 at 4193.877 kb on - strand at 4193.903 kb on - strand at 4193.903 kb on - strand at 4194.045 kb on + strand, within PS417_19340 at 4194.181 kb on - strand, within PS417_19340 at 4194.312 kb on + strand at 4194.313 kb on - strand at 4194.313 kb on - strand at 4194.854 kb on + strand at 4194.854 kb on + strand at 4194.854 kb on + strand at 4194.854 kb on + strand at 4194.854 kb on + strand at 4194.855 kb on - strand at 4194.855 kb on - strand at 4194.855 kb on - strand at 4194.855 kb on - strand at 4194.995 kb on + strand at 4194.996 kb on - strand at 4195.185 kb on - strand, within PS417_19350 at 4195.233 kb on + strand, within PS417_19350 at 4195.238 kb on + strand, within PS417_19350 at 4195.238 kb on + strand, within PS417_19350 at 4195.239 kb on - strand, within PS417_19350 at 4195.239 kb on - strand, within PS417_19350 at 4195.239 kb on - strand, within PS417_19350 at 4195.295 kb on + strand, within PS417_19350 at 4195.520 kb on + strand at 4195.584 kb on + strand at 4195.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,193,423 + PS417_19335 0.36 -2.4 4,193,423 + PS417_19335 0.36 -0.3 4,193,877 - +1.9 4,193,903 - -0.5 4,193,903 - -0.1 4,194,045 + PS417_19340 0.31 +0.5 4,194,181 - PS417_19340 0.74 -0.6 4,194,312 + +0.2 4,194,313 - +0.7 4,194,313 - +0.2 4,194,854 + -0.5 4,194,854 + +0.9 4,194,854 + -0.2 4,194,854 + +0.7 4,194,854 + +1.9 4,194,855 - +0.1 4,194,855 - -0.6 4,194,855 - +0.3 4,194,855 - -1.4 4,194,995 + +1.9 4,194,996 - +2.3 4,195,185 - PS417_19350 0.38 -0.1 4,195,233 + PS417_19350 0.47 +0.5 4,195,238 + PS417_19350 0.48 -1.5 4,195,238 + PS417_19350 0.48 -0.5 4,195,239 - PS417_19350 0.48 -1.3 4,195,239 - PS417_19350 0.48 +0.5 4,195,239 - PS417_19350 0.48 -1.3 4,195,295 + PS417_19350 0.58 -1.0 4,195,520 + -0.0 4,195,584 + -1.4 4,195,585 - -0.4
Or see this region's nucleotide sequence