Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19325 and PS417_19330 are separated by 127 nucleotides PS417_19330 and PS417_19335 are separated by 239 nucleotides PS417_19335 and PS417_19340 are separated by 142 nucleotides
PS417_19325: PS417_19325 - hypothetical protein, at 4,191,127 to 4,191,933
_19325
PS417_19330: PS417_19330 - SAM-dependent methyltransferase, at 4,192,061 to 4,192,972
_19330
PS417_19335: PS417_19335 - isochorismatase, at 4,193,212 to 4,193,802
_19335
PS417_19340: PS417_19340 - hypothetical protein, at 4,193,945 to 4,194,265
_19340
Position (kb) 4192
4193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4191.340 kb on - strand, within PS417_19325 at 4191.450 kb on + strand, within PS417_19325 at 4191.450 kb on + strand, within PS417_19325 at 4191.669 kb on + strand, within PS417_19325 at 4191.983 kb on + strand at 4191.983 kb on + strand at 4191.984 kb on - strand at 4192.011 kb on - strand at 4192.011 kb on - strand at 4192.011 kb on - strand at 4192.018 kb on + strand at 4192.057 kb on - strand at 4192.079 kb on + strand at 4192.717 kb on - strand, within PS417_19330 at 4193.008 kb on + strand at 4193.036 kb on - strand at 4193.036 kb on - strand at 4193.036 kb on - strand at 4193.036 kb on - strand at 4193.132 kb on + strand at 4193.132 kb on + strand at 4193.132 kb on + strand at 4193.133 kb on - strand at 4193.312 kb on - strand, within PS417_19335 at 4193.423 kb on + strand, within PS417_19335 at 4193.423 kb on + strand, within PS417_19335 at 4193.877 kb on - strand at 4193.903 kb on - strand at 4193.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,191,340 - PS417_19325 0.26 +0.1 4,191,450 + PS417_19325 0.40 -1.9 4,191,450 + PS417_19325 0.40 +1.5 4,191,669 + PS417_19325 0.67 -0.3 4,191,983 + -0.8 4,191,983 + +1.9 4,191,984 - -0.3 4,192,011 - -0.0 4,192,011 - -0.1 4,192,011 - +0.6 4,192,018 + +0.3 4,192,057 - +0.1 4,192,079 + -1.5 4,192,717 - PS417_19330 0.72 -0.3 4,193,008 + +1.1 4,193,036 - +1.9 4,193,036 - +1.0 4,193,036 - -0.3 4,193,036 - +0.4 4,193,132 + +0.5 4,193,132 + +0.6 4,193,132 + +0.2 4,193,133 - -0.8 4,193,312 - PS417_19335 0.17 -1.6 4,193,423 + PS417_19335 0.36 -2.4 4,193,423 + PS417_19335 0.36 -0.3 4,193,877 - +1.9 4,193,903 - -0.5 4,193,903 - -0.1
Or see this region's nucleotide sequence