Strain Fitness in Pseudomonas simiae WCS417 around PS417_19145

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19135 and PS417_19140 are separated by 21 nucleotidesPS417_19140 and PS417_19145 are separated by 46 nucleotidesPS417_19145 and PS417_19150 are separated by 71 nucleotides PS417_19135: PS417_19135 - DeoR faimly transcriptional regulator, at 4,133,261 to 4,134,187 _19135 PS417_19140: PS417_19140 - TenA family transcriptional regulator, at 4,134,209 to 4,135,009 _19140 PS417_19145: PS417_19145 - membrane protein, at 4,135,056 to 4,137,518 _19145 PS417_19150: PS417_19150 - ABC transporter ATP-binding protein, at 4,137,590 to 4,139,392 _19150 Position (kb) 4135 4136 4137 4138Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 4134.141 kb on - strandat 4134.141 kb on - strandat 4134.141 kb on - strandat 4134.205 kb on + strandat 4134.300 kb on + strand, within PS417_19140at 4134.300 kb on + strand, within PS417_19140at 4134.300 kb on + strand, within PS417_19140at 4134.301 kb on + strand, within PS417_19140at 4134.301 kb on - strand, within PS417_19140at 4134.301 kb on - strand, within PS417_19140at 4134.306 kb on + strand, within PS417_19140at 4134.306 kb on + strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strand, within PS417_19140at 4134.307 kb on - strandat 4134.307 kb on - strand, within PS417_19140at 4134.486 kb on + strand, within PS417_19140at 4134.487 kb on - strand, within PS417_19140at 4134.543 kb on + strand, within PS417_19140at 4134.544 kb on - strand, within PS417_19140at 4134.719 kb on - strand, within PS417_19140at 4134.798 kb on + strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.799 kb on - strand, within PS417_19140at 4134.841 kb on - strand, within PS417_19140at 4134.889 kb on - strand, within PS417_19140at 4134.925 kb on + strand, within PS417_19140at 4135.038 kb on + strandat 4135.038 kb on + strandat 4135.038 kb on + strandat 4135.038 kb on + strandat 4135.039 kb on - strandat 4135.122 kb on - strandat 4135.122 kb on - strandat 4135.347 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.513 kb on + strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.514 kb on - strand, within PS417_19145at 4135.517 kb on + strand, within PS417_19145at 4135.517 kb on + strand, within PS417_19145at 4135.518 kb on - strand, within PS417_19145at 4135.518 kb on - strand, within PS417_19145at 4135.518 kb on - strand, within PS417_19145at 4135.518 kb on - strandat 4135.755 kb on + strand, within PS417_19145at 4135.766 kb on + strand, within PS417_19145at 4135.767 kb on - strand, within PS417_19145at 4135.913 kb on - strand, within PS417_19145at 4135.951 kb on + strand, within PS417_19145at 4135.952 kb on - strand, within PS417_19145at 4136.422 kb on + strand, within PS417_19145at 4136.422 kb on + strand, within PS417_19145at 4136.423 kb on - strand, within PS417_19145at 4136.423 kb on - strand, within PS417_19145at 4136.586 kb on - strand, within PS417_19145at 4136.714 kb on - strand, within PS417_19145at 4136.987 kb on + strand, within PS417_19145at 4136.987 kb on + strand, within PS417_19145at 4136.987 kb on + strand, within PS417_19145at 4136.987 kb on + strand, within PS417_19145at 4136.988 kb on - strand, within PS417_19145at 4136.988 kb on - strand, within PS417_19145at 4137.006 kb on + strand, within PS417_19145at 4137.007 kb on - strand, within PS417_19145at 4137.082 kb on + strand, within PS417_19145at 4137.148 kb on + strand, within PS417_19145at 4137.149 kb on - strand, within PS417_19145at 4137.301 kb on + strandat 4137.301 kb on + strandat 4137.302 kb on - strandat 4137.328 kb on + strandat 4137.328 kb on + strandat 4137.341 kb on - strandat 4137.341 kb on - strandat 4137.341 kb on - strandat 4137.341 kb on - strandat 4137.341 kb on - strandat 4137.343 kb on + strandat 4137.343 kb on + strandat 4137.343 kb on + strandat 4137.344 kb on - strandat 4137.391 kb on + strandat 4137.416 kb on - strandat 4137.450 kb on + strandat 4137.451 kb on - strandat 4137.587 kb on - strandat 4137.628 kb on - strandat 4137.699 kb on - strandat 4137.748 kb on + strandat 4137.749 kb on - strandat 4137.749 kb on - strandat 4137.751 kb on + strandat 4137.752 kb on - strandat 4137.752 kb on - strandat 4138.186 kb on + strand, within PS417_19150at 4138.186 kb on + strand, within PS417_19150at 4138.187 kb on - strand, within PS417_19150at 4138.299 kb on - strand, within PS417_19150at 4138.351 kb on - strand, within PS417_19150at 4138.416 kb on + strand, within PS417_19150at 4138.416 kb on + strand, within PS417_19150at 4138.417 kb on - strand, within PS417_19150at 4138.422 kb on + strand, within PS417_19150at 4138.470 kb on + strand, within PS417_19150at 4138.470 kb on + strand, within PS417_19150at 4138.471 kb on - strand, within PS417_19150at 4138.471 kb on - strand, within PS417_19150

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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4,134,141 - -0.2
4,134,141 - +3.1
4,134,141 - +0.0
4,134,205 + -0.3
4,134,300 + PS417_19140 0.11 +0.8
4,134,300 + PS417_19140 0.11 +1.4
4,134,300 + PS417_19140 0.11 +0.3
4,134,301 + PS417_19140 0.11 +7.2
4,134,301 - PS417_19140 0.11 +1.1
4,134,301 - PS417_19140 0.11 +0.6
4,134,306 + PS417_19140 0.12 +0.3
4,134,306 + PS417_19140 0.12 +0.1
4,134,307 - PS417_19140 0.12 +2.3
4,134,307 - PS417_19140 0.12 -0.4
4,134,307 - PS417_19140 0.12 +0.8
4,134,307 - PS417_19140 0.12 -0.1
4,134,307 - PS417_19140 0.12 -0.4
4,134,307 - +2.3
4,134,307 - PS417_19140 0.12 -1.6
4,134,486 + PS417_19140 0.35 +1.1
4,134,487 - PS417_19140 0.35 -0.1
4,134,543 + PS417_19140 0.42 -0.9
4,134,544 - PS417_19140 0.42 -1.7
4,134,719 - PS417_19140 0.64 +0.9
4,134,798 + PS417_19140 0.74 +0.6
4,134,799 - PS417_19140 0.74 -0.6
4,134,799 - PS417_19140 0.74 +1.2
4,134,799 - PS417_19140 0.74 -1.3
4,134,799 - PS417_19140 0.74 +0.7
4,134,841 - PS417_19140 0.79 -0.2
4,134,889 - PS417_19140 0.85 -1.4
4,134,925 + PS417_19140 0.89 -0.4
4,135,038 + -1.4
4,135,038 + +1.2
4,135,038 + +0.1
4,135,038 + -0.4
4,135,039 - -0.1
4,135,122 - +1.1
4,135,122 - -2.3
4,135,347 + PS417_19145 0.12 +1.2
4,135,513 + PS417_19145 0.19 +1.1
4,135,513 + PS417_19145 0.19 +1.1
4,135,513 + PS417_19145 0.19 -0.1
4,135,513 + PS417_19145 0.19 +1.3
4,135,513 + PS417_19145 0.19 +4.3
4,135,513 + PS417_19145 0.19 +1.5
4,135,513 + PS417_19145 0.19 +1.4
4,135,513 + PS417_19145 0.19 +0.4
4,135,513 + PS417_19145 0.19 +1.3
4,135,513 + PS417_19145 0.19 +1.5
4,135,513 + PS417_19145 0.19 +1.4
4,135,514 - PS417_19145 0.19 +1.2
4,135,514 - PS417_19145 0.19 +0.4
4,135,514 - PS417_19145 0.19 +1.1
4,135,514 - PS417_19145 0.19 +1.7
4,135,517 + PS417_19145 0.19 +1.3
4,135,517 + PS417_19145 0.19 +1.2
4,135,518 - PS417_19145 0.19 +2.3
4,135,518 - PS417_19145 0.19 +1.4
4,135,518 - PS417_19145 0.19 +2.6
4,135,518 - +2.9
4,135,755 + PS417_19145 0.28 +1.9
4,135,766 + PS417_19145 0.29 +4.0
4,135,767 - PS417_19145 0.29 +1.2
4,135,913 - PS417_19145 0.35 +2.6
4,135,951 + PS417_19145 0.36 +1.6
4,135,952 - PS417_19145 0.36 +1.5
4,136,422 + PS417_19145 0.55 +2.7
4,136,422 + PS417_19145 0.55 +0.6
4,136,423 - PS417_19145 0.56 +3.0
4,136,423 - PS417_19145 0.56 +2.1
4,136,586 - PS417_19145 0.62 +0.7
4,136,714 - PS417_19145 0.67 +1.7
4,136,987 + PS417_19145 0.78 +1.1
4,136,987 + PS417_19145 0.78 +1.3
4,136,987 + PS417_19145 0.78 -0.3
4,136,987 + PS417_19145 0.78 +2.0
4,136,988 - PS417_19145 0.78 -0.3
4,136,988 - PS417_19145 0.78 +1.6
4,137,006 + PS417_19145 0.79 +0.3
4,137,007 - PS417_19145 0.79 -0.1
4,137,082 + PS417_19145 0.82 +0.7
4,137,148 + PS417_19145 0.85 +1.6
4,137,149 - PS417_19145 0.85 +0.7
4,137,301 + +0.1
4,137,301 + +1.3
4,137,302 - +2.3
4,137,328 + +2.0
4,137,328 + +3.7
4,137,341 - +1.8
4,137,341 - +1.8
4,137,341 - +1.0
4,137,341 - +1.1
4,137,341 - +1.3
4,137,343 + +0.7
4,137,343 + +1.2
4,137,343 + +1.1
4,137,344 - +1.8
4,137,391 + +1.9
4,137,416 - +0.6
4,137,450 + +1.2
4,137,451 - +0.9
4,137,587 - +0.6
4,137,628 - +0.2
4,137,699 - +2.3
4,137,748 + +1.2
4,137,749 - -1.3
4,137,749 - +1.5
4,137,751 + +1.8
4,137,752 - -0.0
4,137,752 - +3.3
4,138,186 + PS417_19150 0.33 -0.8
4,138,186 + PS417_19150 0.33 +1.2
4,138,187 - PS417_19150 0.33 +3.3
4,138,299 - PS417_19150 0.39 +1.5
4,138,351 - PS417_19150 0.42 -0.0
4,138,416 + PS417_19150 0.46 -0.2
4,138,416 + PS417_19150 0.46 -0.3
4,138,417 - PS417_19150 0.46 -2.2
4,138,422 + PS417_19150 0.46 -0.8
4,138,470 + PS417_19150 0.49 +1.0
4,138,470 + PS417_19150 0.49 +0.3
4,138,471 - PS417_19150 0.49 -0.8
4,138,471 - PS417_19150 0.49 -0.3

Or see this region's nucleotide sequence