Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19135 and PS417_19140 are separated by 21 nucleotides PS417_19140 and PS417_19145 are separated by 46 nucleotides PS417_19145 and PS417_19150 are separated by 71 nucleotides
PS417_19135: PS417_19135 - DeoR faimly transcriptional regulator, at 4,133,261 to 4,134,187
_19135
PS417_19140: PS417_19140 - TenA family transcriptional regulator, at 4,134,209 to 4,135,009
_19140
PS417_19145: PS417_19145 - membrane protein, at 4,135,056 to 4,137,518
_19145
PS417_19150: PS417_19150 - ABC transporter ATP-binding protein, at 4,137,590 to 4,139,392
_19150
Position (kb)
4135
4136
4137
4138 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 4134.141 kb on - strand at 4134.141 kb on - strand at 4134.141 kb on - strand at 4134.205 kb on + strand at 4134.300 kb on + strand, within PS417_19140 at 4134.300 kb on + strand, within PS417_19140 at 4134.300 kb on + strand, within PS417_19140 at 4134.301 kb on + strand, within PS417_19140 at 4134.301 kb on - strand, within PS417_19140 at 4134.301 kb on - strand, within PS417_19140 at 4134.306 kb on + strand, within PS417_19140 at 4134.306 kb on + strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand, within PS417_19140 at 4134.307 kb on - strand at 4134.307 kb on - strand, within PS417_19140 at 4134.486 kb on + strand, within PS417_19140 at 4134.487 kb on - strand, within PS417_19140 at 4134.543 kb on + strand, within PS417_19140 at 4134.544 kb on - strand, within PS417_19140 at 4134.719 kb on - strand, within PS417_19140 at 4134.798 kb on + strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.799 kb on - strand, within PS417_19140 at 4134.841 kb on - strand, within PS417_19140 at 4134.889 kb on - strand, within PS417_19140 at 4134.925 kb on + strand, within PS417_19140 at 4135.038 kb on + strand at 4135.038 kb on + strand at 4135.038 kb on + strand at 4135.038 kb on + strand at 4135.039 kb on - strand at 4135.122 kb on - strand at 4135.122 kb on - strand at 4135.347 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.513 kb on + strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.514 kb on - strand, within PS417_19145 at 4135.517 kb on + strand, within PS417_19145 at 4135.517 kb on + strand, within PS417_19145 at 4135.518 kb on - strand, within PS417_19145 at 4135.518 kb on - strand, within PS417_19145 at 4135.518 kb on - strand, within PS417_19145 at 4135.518 kb on - strand at 4135.755 kb on + strand, within PS417_19145 at 4135.766 kb on + strand, within PS417_19145 at 4135.767 kb on - strand, within PS417_19145 at 4135.913 kb on - strand, within PS417_19145 at 4135.951 kb on + strand, within PS417_19145 at 4135.952 kb on - strand, within PS417_19145 at 4136.422 kb on + strand, within PS417_19145 at 4136.422 kb on + strand, within PS417_19145 at 4136.423 kb on - strand, within PS417_19145 at 4136.423 kb on - strand, within PS417_19145 at 4136.586 kb on - strand, within PS417_19145 at 4136.714 kb on - strand, within PS417_19145 at 4136.987 kb on + strand, within PS417_19145 at 4136.987 kb on + strand, within PS417_19145 at 4136.987 kb on + strand, within PS417_19145 at 4136.987 kb on + strand, within PS417_19145 at 4136.988 kb on - strand, within PS417_19145 at 4136.988 kb on - strand, within PS417_19145 at 4137.006 kb on + strand, within PS417_19145 at 4137.007 kb on - strand, within PS417_19145 at 4137.082 kb on + strand, within PS417_19145 at 4137.148 kb on + strand, within PS417_19145 at 4137.149 kb on - strand, within PS417_19145 at 4137.301 kb on + strand at 4137.301 kb on + strand at 4137.302 kb on - strand at 4137.328 kb on + strand at 4137.328 kb on + strand at 4137.341 kb on - strand at 4137.341 kb on - strand at 4137.341 kb on - strand at 4137.341 kb on - strand at 4137.341 kb on - strand at 4137.343 kb on + strand at 4137.343 kb on + strand at 4137.343 kb on + strand at 4137.344 kb on - strand at 4137.391 kb on + strand at 4137.416 kb on - strand at 4137.450 kb on + strand at 4137.451 kb on - strand at 4137.587 kb on - strand at 4137.628 kb on - strand at 4137.699 kb on - strand at 4137.748 kb on + strand at 4137.749 kb on - strand at 4137.749 kb on - strand at 4137.751 kb on + strand at 4137.752 kb on - strand at 4137.752 kb on - strand at 4138.186 kb on + strand, within PS417_19150 at 4138.186 kb on + strand, within PS417_19150 at 4138.187 kb on - strand, within PS417_19150 at 4138.299 kb on - strand, within PS417_19150 at 4138.351 kb on - strand, within PS417_19150 at 4138.416 kb on + strand, within PS417_19150 at 4138.416 kb on + strand, within PS417_19150 at 4138.417 kb on - strand, within PS417_19150 at 4138.422 kb on + strand, within PS417_19150 at 4138.470 kb on + strand, within PS417_19150 at 4138.470 kb on + strand, within PS417_19150 at 4138.471 kb on - strand, within PS417_19150 at 4138.471 kb on - strand, within PS417_19150
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,134,141 - -0.2 4,134,141 - +3.1 4,134,141 - +0.0 4,134,205 + -0.3 4,134,300 + PS417_19140 0.11 +0.8 4,134,300 + PS417_19140 0.11 +1.4 4,134,300 + PS417_19140 0.11 +0.3 4,134,301 + PS417_19140 0.11 +7.2 4,134,301 - PS417_19140 0.11 +1.1 4,134,301 - PS417_19140 0.11 +0.6 4,134,306 + PS417_19140 0.12 +0.3 4,134,306 + PS417_19140 0.12 +0.1 4,134,307 - PS417_19140 0.12 +2.3 4,134,307 - PS417_19140 0.12 -0.4 4,134,307 - PS417_19140 0.12 +0.8 4,134,307 - PS417_19140 0.12 -0.1 4,134,307 - PS417_19140 0.12 -0.4 4,134,307 - +2.3 4,134,307 - PS417_19140 0.12 -1.6 4,134,486 + PS417_19140 0.35 +1.1 4,134,487 - PS417_19140 0.35 -0.1 4,134,543 + PS417_19140 0.42 -0.9 4,134,544 - PS417_19140 0.42 -1.7 4,134,719 - PS417_19140 0.64 +0.9 4,134,798 + PS417_19140 0.74 +0.6 4,134,799 - PS417_19140 0.74 -0.6 4,134,799 - PS417_19140 0.74 +1.2 4,134,799 - PS417_19140 0.74 -1.3 4,134,799 - PS417_19140 0.74 +0.7 4,134,841 - PS417_19140 0.79 -0.2 4,134,889 - PS417_19140 0.85 -1.4 4,134,925 + PS417_19140 0.89 -0.4 4,135,038 + -1.4 4,135,038 + +1.2 4,135,038 + +0.1 4,135,038 + -0.4 4,135,039 - -0.1 4,135,122 - +1.1 4,135,122 - -2.3 4,135,347 + PS417_19145 0.12 +1.2 4,135,513 + PS417_19145 0.19 +1.1 4,135,513 + PS417_19145 0.19 +1.1 4,135,513 + PS417_19145 0.19 -0.1 4,135,513 + PS417_19145 0.19 +1.3 4,135,513 + PS417_19145 0.19 +4.3 4,135,513 + PS417_19145 0.19 +1.5 4,135,513 + PS417_19145 0.19 +1.4 4,135,513 + PS417_19145 0.19 +0.4 4,135,513 + PS417_19145 0.19 +1.3 4,135,513 + PS417_19145 0.19 +1.5 4,135,513 + PS417_19145 0.19 +1.4 4,135,514 - PS417_19145 0.19 +1.2 4,135,514 - PS417_19145 0.19 +0.4 4,135,514 - PS417_19145 0.19 +1.1 4,135,514 - PS417_19145 0.19 +1.7 4,135,517 + PS417_19145 0.19 +1.3 4,135,517 + PS417_19145 0.19 +1.2 4,135,518 - PS417_19145 0.19 +2.3 4,135,518 - PS417_19145 0.19 +1.4 4,135,518 - PS417_19145 0.19 +2.6 4,135,518 - +2.9 4,135,755 + PS417_19145 0.28 +1.9 4,135,766 + PS417_19145 0.29 +4.0 4,135,767 - PS417_19145 0.29 +1.2 4,135,913 - PS417_19145 0.35 +2.6 4,135,951 + PS417_19145 0.36 +1.6 4,135,952 - PS417_19145 0.36 +1.5 4,136,422 + PS417_19145 0.55 +2.7 4,136,422 + PS417_19145 0.55 +0.6 4,136,423 - PS417_19145 0.56 +3.0 4,136,423 - PS417_19145 0.56 +2.1 4,136,586 - PS417_19145 0.62 +0.7 4,136,714 - PS417_19145 0.67 +1.7 4,136,987 + PS417_19145 0.78 +1.1 4,136,987 + PS417_19145 0.78 +1.3 4,136,987 + PS417_19145 0.78 -0.3 4,136,987 + PS417_19145 0.78 +2.0 4,136,988 - PS417_19145 0.78 -0.3 4,136,988 - PS417_19145 0.78 +1.6 4,137,006 + PS417_19145 0.79 +0.3 4,137,007 - PS417_19145 0.79 -0.1 4,137,082 + PS417_19145 0.82 +0.7 4,137,148 + PS417_19145 0.85 +1.6 4,137,149 - PS417_19145 0.85 +0.7 4,137,301 + +0.1 4,137,301 + +1.3 4,137,302 - +2.3 4,137,328 + +2.0 4,137,328 + +3.7 4,137,341 - +1.8 4,137,341 - +1.8 4,137,341 - +1.0 4,137,341 - +1.1 4,137,341 - +1.3 4,137,343 + +0.7 4,137,343 + +1.2 4,137,343 + +1.1 4,137,344 - +1.8 4,137,391 + +1.9 4,137,416 - +0.6 4,137,450 + +1.2 4,137,451 - +0.9 4,137,587 - +0.6 4,137,628 - +0.2 4,137,699 - +2.3 4,137,748 + +1.2 4,137,749 - -1.3 4,137,749 - +1.5 4,137,751 + +1.8 4,137,752 - -0.0 4,137,752 - +3.3 4,138,186 + PS417_19150 0.33 -0.8 4,138,186 + PS417_19150 0.33 +1.2 4,138,187 - PS417_19150 0.33 +3.3 4,138,299 - PS417_19150 0.39 +1.5 4,138,351 - PS417_19150 0.42 -0.0 4,138,416 + PS417_19150 0.46 -0.2 4,138,416 + PS417_19150 0.46 -0.3 4,138,417 - PS417_19150 0.46 -2.2 4,138,422 + PS417_19150 0.46 -0.8 4,138,470 + PS417_19150 0.49 +1.0 4,138,470 + PS417_19150 0.49 +0.3 4,138,471 - PS417_19150 0.49 -0.8 4,138,471 - PS417_19150 0.49 -0.3
Or see this region's nucleotide sequence