Strain Fitness in Pseudomonas simiae WCS417 around PS417_01865

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01860 and PS417_01865 overlap by 4 nucleotidesPS417_01865 and PS417_01870 overlap by 1 nucleotidesPS417_01870 and PS417_01875 are separated by 144 nucleotides PS417_01860: PS417_01860 - ubiquinone biosynthesis protein UbiB, at 412,788 to 414,392 _01860 PS417_01865: PS417_01865 - sterol-binding protein, at 414,389 to 415,012 _01865 PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782 _01870 PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202 _01875 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 415.783 kb on - strandat 415.783 kb on - strandat 415.817 kb on - strandat 415.831 kb on - strandat 415.855 kb on + strandat 415.855 kb on + strandat 415.855 kb on + strandat 415.856 kb on - strandat 415.856 kb on - strandat 415.936 kb on - strandat 415.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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415,783 - -2.5
415,783 - -3.2
415,817 - -0.1
415,831 - -1.4
415,855 + -0.8
415,855 + +3.5
415,855 + +2.6
415,856 - +0.1
415,856 - -0.8
415,936 - -0.2
415,936 - -0.9

Or see this region's nucleotide sequence