Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01845 and PS417_01850 are separated by 26 nucleotides PS417_01850 and PS417_01855 are separated by 3 nucleotides PS417_01855 and PS417_01860 are separated by 41 nucleotides PS417_01860 and PS417_01865 overlap by 4 nucleotides PS417_01865 and PS417_01870 overlap by 1 nucleotides
PS417_01845: PS417_01845 - preprotein translocase subunit SecA, at 411,713 to 411,991
_01845
PS417_01850: PS417_01850 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 412,018 to 412,350
_01850
PS417_01855: PS417_01855 - phosphoribosyl-AMP cyclohydrolase, at 412,354 to 412,746
_01855
PS417_01860: PS417_01860 - ubiquinone biosynthesis protein UbiB, at 412,788 to 414,392
_01860
PS417_01865: PS417_01865 - sterol-binding protein, at 414,389 to 415,012
_01865
PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782
_01870
Position (kb) 412
413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 412.141 kb on + strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.281 kb on - strand, within PS417_01850 at 412.355 kb on + strand at 412.355 kb on + strand at 412.355 kb on + strand at 412.356 kb on - strand at 412.437 kb on - strand at 412.598 kb on + strand, within PS417_01855 at 412.679 kb on + strand, within PS417_01855 at 412.680 kb on - strand, within PS417_01855 at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.774 kb on + strand at 412.775 kb on - strand at 412.775 kb on - strand at 412.775 kb on - strand at 412.775 kb on - strand at 412.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 412,141 + PS417_01850 0.37 -1.9 412,142 - PS417_01850 0.37 -0.5 412,142 - PS417_01850 0.37 +0.1 412,280 + PS417_01850 0.79 -0.4 412,280 + PS417_01850 0.79 -2.0 412,281 - PS417_01850 0.79 -0.6 412,355 + -1.1 412,355 + -0.9 412,355 + -1.0 412,356 - -1.3 412,437 - +1.4 412,598 + PS417_01855 0.62 -3.5 412,679 + PS417_01855 0.83 +0.4 412,680 - PS417_01855 0.83 -1.2 412,774 + +0.8 412,774 + -0.5 412,774 + -2.1 412,774 + +1.6 412,774 + -1.6 412,774 + +0.7 412,775 - +0.0 412,775 - +2.9 412,775 - +1.0 412,775 - -0.4 412,775 - +1.6
Or see this region's nucleotide sequence