Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18635 and PS417_18640 are separated by 39 nucleotides PS417_18640 and PS417_18645 are separated by 15 nucleotides PS417_18645 and PS417_18650 are separated by 182 nucleotides PS417_18650 and PS417_18655 are separated by 78 nucleotides PS417_18655 and PS417_18660 are separated by 0 nucleotides PS417_18660 and PS417_18665 are separated by 78 nucleotides PS417_18665 and PS417_18670 are separated by 50 nucleotides PS417_18670 and PS417_18675 are separated by 78 nucleotides
PS417_18635: PS417_18635 - 4-hydroxybenzoyl-CoA thioesterase, at 4,051,169 to 4,051,603
_18635
PS417_18640: PS417_18640 - hydrolase, at 4,051,643 to 4,052,476
_18640
PS417_18645: PS417_18645 - TetR family transcriptional regulator, at 4,052,492 to 4,053,031
_18645
PS417_18650: PS417_18650 - tRNA-Glu, at 4,053,214 to 4,053,289
_18650
PS417_18655: PS417_18655 - tRNA-Ala, at 4,053,368 to 4,053,443
_18655
PS417_18660: PS417_18660 - tRNA-Glu, at 4,053,444 to 4,053,519
_18660
PS417_18665: PS417_18665 - tRNA-Ala, at 4,053,598 to 4,053,673
_18665
PS417_18670: PS417_18670 - tRNA-Glu, at 4,053,724 to 4,053,799
_18670
PS417_18675: PS417_18675 - tRNA-Ala, at 4,053,878 to 4,053,953
_18675
Position (kb) 4052
4053
4054 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4051.512 kb on + strand, within PS417_18635 at 4051.512 kb on + strand, within PS417_18635 at 4051.512 kb on + strand, within PS417_18635 at 4051.513 kb on - strand, within PS417_18635 at 4051.623 kb on - strand at 4051.623 kb on - strand at 4051.642 kb on - strand at 4051.664 kb on + strand at 4051.946 kb on + strand, within PS417_18640 at 4051.947 kb on - strand, within PS417_18640 at 4051.947 kb on - strand, within PS417_18640 at 4051.947 kb on - strand, within PS417_18640 at 4052.270 kb on + strand, within PS417_18640 at 4052.271 kb on - strand, within PS417_18640 at 4052.493 kb on + strand at 4053.303 kb on - strand at 4053.303 kb on - strand at 4053.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,051,512 + PS417_18635 0.79 +0.4 4,051,512 + PS417_18635 0.79 -0.4 4,051,512 + PS417_18635 0.79 -2.4 4,051,513 - PS417_18635 0.79 -0.8 4,051,623 - +0.9 4,051,623 - +0.1 4,051,642 - +0.4 4,051,664 + +0.7 4,051,946 + PS417_18640 0.36 -0.3 4,051,947 - PS417_18640 0.36 -0.0 4,051,947 - PS417_18640 0.36 -0.3 4,051,947 - PS417_18640 0.36 +0.1 4,052,270 + PS417_18640 0.75 +0.7 4,052,271 - PS417_18640 0.75 +2.1 4,052,493 + -1.4 4,053,303 - +1.0 4,053,303 - -0.4 4,053,303 - -1.4
Or see this region's nucleotide sequence