Strain Fitness in Pseudomonas simiae WCS417 around PS417_18550

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18540 and PS417_18545 are separated by 257 nucleotidesPS417_18545 and PS417_18550 overlap by 17 nucleotidesPS417_18550 and PS417_18555 overlap by 4 nucleotides PS417_18540: PS417_18540 - colicin V production CvpA, at 4,025,974 to 4,026,531 _18540 PS417_18545: PS417_18545 - cell division protein, at 4,026,789 to 4,027,451 _18545 PS417_18550: PS417_18550 - folylpolyglutamate synthase, at 4,027,435 to 4,028,742 _18550 PS417_18555: PS417_18555 - acetyl-CoA carboxylase subunit beta, at 4,028,739 to 4,029,659 _18555 Position (kb) 4027 4028 4029Strain fitness (log2 ratio) -2 -1 0 1at 4026.523 kb on - strandat 4026.684 kb on + strandat 4026.931 kb on + strand, within PS417_18545at 4026.938 kb on + strand, within PS417_18545at 4027.430 kb on - strandat 4028.795 kb on - strandat 4028.795 kb on - strandat 4029.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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4,026,523 - +0.3
4,026,684 + -0.5
4,026,931 + PS417_18545 0.21 -0.2
4,026,938 + PS417_18545 0.22 +0.2
4,027,430 - -0.4
4,028,795 - -2.6
4,028,795 - +0.5
4,029,724 - -0.4

Or see this region's nucleotide sequence