Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18505 and PS417_18510 are separated by 197 nucleotides PS417_18510 and PS417_18515 are separated by 105 nucleotides PS417_18515 and PS417_18520 are separated by 55 nucleotides PS417_18520 and PS417_18525 are separated by 107 nucleotides PS417_18525 and PS417_18530 overlap by 4 nucleotides
PS417_18505: PS417_18505 - gamma-glutamylputrescine oxidoreductase, at 4,020,396 to 4,021,679
_18505
PS417_18510: PS417_18510 - tRNA-Asp, at 4,021,877 to 4,021,953
_18510
PS417_18515: PS417_18515 - tRNA-Asp, at 4,022,059 to 4,022,135
_18515
PS417_18520: PS417_18520 - tRNA-Val, at 4,022,191 to 4,022,266
_18520
PS417_18525: PS417_18525 - oxidoreductase, at 4,022,374 to 4,023,153
_18525
PS417_18530: PS417_18530 - O-succinylhomoserine sulfhydrylase, at 4,023,150 to 4,024,361
_18530
Position (kb) 4022
4023
4024 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4021.470 kb on + strand, within PS417_18505 at 4021.471 kb on - strand, within PS417_18505 at 4021.471 kb on - strand at 4021.471 kb on - strand, within PS417_18505 at 4021.473 kb on + strand, within PS417_18505 at 4021.507 kb on - strand, within PS417_18505 at 4021.647 kb on + strand at 4022.233 kb on - strand, within PS417_18520 at 4022.259 kb on - strand at 4022.259 kb on - strand at 4022.385 kb on - strand at 4022.908 kb on + strand, within PS417_18525 at 4023.300 kb on - strand, within PS417_18530 at 4023.303 kb on - strand, within PS417_18530 at 4023.937 kb on + strand, within PS417_18530 at 4023.937 kb on + strand, within PS417_18530 at 4023.937 kb on + strand, within PS417_18530 at 4024.152 kb on - strand, within PS417_18530 at 4024.152 kb on - strand, within PS417_18530
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,021,470 + PS417_18505 0.84 -0.8 4,021,471 - PS417_18505 0.84 -0.1 4,021,471 - +2.0 4,021,471 - PS417_18505 0.84 +1.4 4,021,473 + PS417_18505 0.84 -0.0 4,021,507 - PS417_18505 0.87 -0.8 4,021,647 + +0.6 4,022,233 - PS417_18520 0.55 -0.8 4,022,259 - +0.3 4,022,259 - -0.2 4,022,385 - -1.8 4,022,908 + PS417_18525 0.68 +0.2 4,023,300 - PS417_18530 0.12 -0.7 4,023,303 - PS417_18530 0.13 +0.9 4,023,937 + PS417_18530 0.65 -2.3 4,023,937 + PS417_18530 0.65 -0.9 4,023,937 + PS417_18530 0.65 -0.1 4,024,152 - PS417_18530 0.83 -3.2 4,024,152 - PS417_18530 0.83 -3.0
Or see this region's nucleotide sequence