Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18505 and PS417_18510 are separated by 197 nucleotides PS417_18510 and PS417_18515 are separated by 105 nucleotides PS417_18515 and PS417_18520 are separated by 55 nucleotides PS417_18520 and PS417_18525 are separated by 107 nucleotides
PS417_18505: PS417_18505 - gamma-glutamylputrescine oxidoreductase, at 4,020,396 to 4,021,679
_18505
PS417_18510: PS417_18510 - tRNA-Asp, at 4,021,877 to 4,021,953
_18510
PS417_18515: PS417_18515 - tRNA-Asp, at 4,022,059 to 4,022,135
_18515
PS417_18520: PS417_18520 - tRNA-Val, at 4,022,191 to 4,022,266
_18520
PS417_18525: PS417_18525 - oxidoreductase, at 4,022,374 to 4,023,153
_18525
Position (kb) 4021
4022 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand at 4020.906 kb on + strand, within PS417_18505 at 4020.907 kb on - strand at 4020.907 kb on - strand at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand at 4020.911 kb on - strand, within PS417_18505 at 4020.911 kb on - strand, within PS417_18505 at 4020.911 kb on - strand, within PS417_18505 at 4020.998 kb on + strand, within PS417_18505 at 4020.999 kb on - strand, within PS417_18505 at 4021.006 kb on - strand at 4021.006 kb on - strand, within PS417_18505 at 4021.055 kb on - strand, within PS417_18505 at 4021.110 kb on + strand, within PS417_18505 at 4021.176 kb on - strand, within PS417_18505 at 4021.225 kb on - strand, within PS417_18505 at 4021.245 kb on + strand, within PS417_18505 at 4021.245 kb on + strand, within PS417_18505 at 4021.246 kb on - strand, within PS417_18505 at 4021.258 kb on - strand, within PS417_18505 at 4021.261 kb on - strand, within PS417_18505 at 4021.308 kb on + strand, within PS417_18505 at 4021.470 kb on + strand, within PS417_18505 at 4021.471 kb on - strand, within PS417_18505 at 4021.471 kb on - strand at 4021.471 kb on - strand, within PS417_18505 at 4021.473 kb on + strand, within PS417_18505 at 4021.507 kb on - strand, within PS417_18505 at 4021.647 kb on + strand at 4022.233 kb on - strand, within PS417_18520 at 4022.259 kb on - strand at 4022.259 kb on - strand at 4022.385 kb on - strand at 4022.908 kb on + strand, within PS417_18525
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,020,906 + PS417_18505 0.40 +0.8 4,020,906 + PS417_18505 0.40 -0.3 4,020,906 + PS417_18505 0.40 -1.2 4,020,906 + +2.2 4,020,906 + PS417_18505 0.40 -0.3 4,020,907 - +3.5 4,020,907 - +0.9 4,020,907 - PS417_18505 0.40 -0.7 4,020,907 - PS417_18505 0.40 +0.7 4,020,907 - PS417_18505 0.40 +1.0 4,020,907 - PS417_18505 0.40 -0.3 4,020,907 - PS417_18505 0.40 +0.9 4,020,907 - PS417_18505 0.40 +0.5 4,020,907 - PS417_18505 0.40 -0.3 4,020,910 + PS417_18505 0.40 +0.5 4,020,910 + PS417_18505 0.40 +0.0 4,020,910 + PS417_18505 0.40 -1.1 4,020,910 + PS417_18505 0.40 +0.0 4,020,910 + PS417_18505 0.40 +1.2 4,020,910 + +2.8 4,020,911 - PS417_18505 0.40 +0.3 4,020,911 - PS417_18505 0.40 -0.4 4,020,911 - PS417_18505 0.40 -0.6 4,020,998 + PS417_18505 0.47 +0.2 4,020,999 - PS417_18505 0.47 -0.2 4,021,006 - +1.0 4,021,006 - PS417_18505 0.48 -1.2 4,021,055 - PS417_18505 0.51 +0.9 4,021,110 + PS417_18505 0.56 +1.6 4,021,176 - PS417_18505 0.61 -0.6 4,021,225 - PS417_18505 0.65 -1.1 4,021,245 + PS417_18505 0.66 +0.3 4,021,245 + PS417_18505 0.66 -0.2 4,021,246 - PS417_18505 0.66 -0.4 4,021,258 - PS417_18505 0.67 +1.7 4,021,261 - PS417_18505 0.67 -0.6 4,021,308 + PS417_18505 0.71 +3.9 4,021,470 + PS417_18505 0.84 -0.8 4,021,471 - PS417_18505 0.84 -0.1 4,021,471 - +2.0 4,021,471 - PS417_18505 0.84 +1.4 4,021,473 + PS417_18505 0.84 -0.0 4,021,507 - PS417_18505 0.87 -0.8 4,021,647 + +0.6 4,022,233 - PS417_18520 0.55 -0.8 4,022,259 - +0.3 4,022,259 - -0.2 4,022,385 - -1.8 4,022,908 + PS417_18525 0.68 +0.2
Or see this region's nucleotide sequence