Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18490 and PS417_18495 overlap by 4 nucleotides PS417_18495 and PS417_18500 are separated by 258 nucleotides PS417_18500 and PS417_18505 are separated by 184 nucleotides
PS417_18490: PS417_18490 - hypothetical protein, at 4,019,170 to 4,019,418
_18490
PS417_18495: PS417_18495 - hypothetical protein, at 4,019,415 to 4,019,876
_18495
PS417_18500: PS417_18500 - tRNA-Val, at 4,020,135 to 4,020,211
_18500
PS417_18505: PS417_18505 - gamma-glutamylputrescine oxidoreductase, at 4,020,396 to 4,021,679
_18505
Position (kb) 4020
4021 Strain fitness (log2 ratio) -1
0
1
2
3 at 4019.355 kb on + strand, within PS417_18490 at 4019.355 kb on + strand, within PS417_18490 at 4019.356 kb on - strand, within PS417_18490 at 4019.416 kb on + strand at 4019.512 kb on + strand, within PS417_18495 at 4019.598 kb on + strand, within PS417_18495 at 4019.633 kb on - strand, within PS417_18495 at 4019.832 kb on + strand at 4019.833 kb on - strand at 4019.833 kb on - strand at 4019.833 kb on - strand at 4019.843 kb on + strand at 4019.870 kb on + strand at 4019.871 kb on - strand at 4019.871 kb on - strand at 4019.914 kb on + strand at 4019.914 kb on + strand at 4019.933 kb on + strand at 4019.953 kb on + strand at 4020.281 kb on - strand at 4020.352 kb on + strand at 4020.511 kb on - strand at 4020.630 kb on + strand, within PS417_18505 at 4020.631 kb on - strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand at 4020.906 kb on + strand, within PS417_18505 at 4020.907 kb on - strand at 4020.907 kb on - strand at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand at 4020.911 kb on - strand, within PS417_18505 at 4020.911 kb on - strand, within PS417_18505 at 4020.911 kb on - strand, within PS417_18505 at 4020.998 kb on + strand, within PS417_18505 at 4020.999 kb on - strand, within PS417_18505 at 4021.006 kb on - strand at 4021.006 kb on - strand, within PS417_18505 at 4021.055 kb on - strand, within PS417_18505 at 4021.110 kb on + strand, within PS417_18505 at 4021.176 kb on - strand, within PS417_18505
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 4,019,355 + PS417_18490 0.74 +0.0 4,019,355 + PS417_18490 0.74 +0.0 4,019,356 - PS417_18490 0.75 -0.7 4,019,416 + +1.3 4,019,512 + PS417_18495 0.21 -0.4 4,019,598 + PS417_18495 0.40 -0.7 4,019,633 - PS417_18495 0.47 +2.2 4,019,832 + -0.3 4,019,833 - -0.7 4,019,833 - +2.2 4,019,833 - -1.1 4,019,843 + +0.9 4,019,870 + -0.4 4,019,871 - -0.8 4,019,871 - +0.9 4,019,914 + +1.6 4,019,914 + -0.5 4,019,933 + +1.2 4,019,953 + -0.7 4,020,281 - +1.6 4,020,352 + +0.6 4,020,511 - -0.0 4,020,630 + PS417_18505 0.18 +2.0 4,020,631 - PS417_18505 0.18 +0.0 4,020,906 + PS417_18505 0.40 +0.8 4,020,906 + PS417_18505 0.40 -0.3 4,020,906 + PS417_18505 0.40 -1.2 4,020,906 + +2.2 4,020,906 + PS417_18505 0.40 -0.3 4,020,907 - +3.5 4,020,907 - +0.9 4,020,907 - PS417_18505 0.40 -0.7 4,020,907 - PS417_18505 0.40 +0.7 4,020,907 - PS417_18505 0.40 +1.0 4,020,907 - PS417_18505 0.40 -0.3 4,020,907 - PS417_18505 0.40 +0.9 4,020,907 - PS417_18505 0.40 +0.5 4,020,907 - PS417_18505 0.40 -0.3 4,020,910 + PS417_18505 0.40 +0.5 4,020,910 + PS417_18505 0.40 +0.0 4,020,910 + PS417_18505 0.40 -1.1 4,020,910 + PS417_18505 0.40 +0.0 4,020,910 + PS417_18505 0.40 +1.2 4,020,910 + +2.8 4,020,911 - PS417_18505 0.40 +0.3 4,020,911 - PS417_18505 0.40 -0.4 4,020,911 - PS417_18505 0.40 -0.6 4,020,998 + PS417_18505 0.47 +0.2 4,020,999 - PS417_18505 0.47 -0.2 4,021,006 - +1.0 4,021,006 - PS417_18505 0.48 -1.2 4,021,055 - PS417_18505 0.51 +0.9 4,021,110 + PS417_18505 0.56 +1.6 4,021,176 - PS417_18505 0.61 -0.6
Or see this region's nucleotide sequence