Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01825 and PS417_01830 are separated by 87 nucleotides PS417_01830 and PS417_01835 overlap by 4 nucleotides PS417_01835 and PS417_01840 overlap by 4 nucleotides PS417_01840 and PS417_01845 are separated by 10 nucleotides PS417_01845 and PS417_01850 are separated by 26 nucleotides
PS417_01825: PS417_01825 - chemotaxis protein, at 407,805 to 409,721
_01825
PS417_01830: PS417_01830 - 16S rRNA methyltransferase, at 409,809 to 410,516
_01830
PS417_01835: PS417_01835 - twin-arginine protein translocation system subunit TatC, at 410,513 to 411,301
_01835
PS417_01840: PS417_01840 - preprotein translocase, at 411,298 to 411,702
_01840
PS417_01845: PS417_01845 - preprotein translocase subunit SecA, at 411,713 to 411,991
_01845
PS417_01850: PS417_01850 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 412,018 to 412,350
_01850
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 409.633 kb on - strand at 409.644 kb on + strand at 409.645 kb on - strand at 409.645 kb on - strand at 409.789 kb on + strand at 410.189 kb on - strand, within PS417_01830 at 411.322 kb on - strand at 411.767 kb on - strand, within PS417_01845 at 412.141 kb on + strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.142 kb on - strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.280 kb on + strand, within PS417_01850 at 412.281 kb on - strand, within PS417_01850
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 409,633 - -2.1 409,644 + -0.0 409,645 - +1.9 409,645 - +0.4 409,789 + +0.7 410,189 - PS417_01830 0.54 -0.8 411,322 - +0.3 411,767 - PS417_01845 0.19 +0.7 412,141 + PS417_01850 0.37 -1.9 412,142 - PS417_01850 0.37 -0.5 412,142 - PS417_01850 0.37 +0.1 412,280 + PS417_01850 0.79 -0.4 412,280 + PS417_01850 0.79 -2.0 412,281 - PS417_01850 0.79 -0.6
Or see this region's nucleotide sequence