Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01780 and PS417_01785 overlap by 4 nucleotides PS417_01785 and PS417_01790 are separated by 266 nucleotides
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
PS417_01785: PS417_01785 - D-tyrosyl-tRNA(Tyr) deacylase, at 396,842 to 397,279
_01785
PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282
_01790
Position (kb) 396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 395.947 kb on - strand at 395.987 kb on - strand, within PS417_01780 at 396.357 kb on + strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780 at 396.979 kb on - strand, within PS417_01785 at 396.995 kb on + strand, within PS417_01785 at 397.174 kb on - strand at 397.299 kb on + strand at 397.332 kb on - strand at 397.368 kb on + strand at 397.372 kb on + strand at 397.372 kb on + strand at 397.417 kb on + strand at 397.421 kb on + strand at 397.422 kb on - strand at 397.495 kb on + strand at 397.495 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.502 kb on - strand at 397.554 kb on + strand at 397.708 kb on + strand at 397.766 kb on - strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.913 kb on - strand, within PS417_01790 at 398.087 kb on - strand, within PS417_01790
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 395,947 - -1.3 395,987 - PS417_01780 0.12 -0.2 396,357 + PS417_01780 0.50 -0.1 396,358 - PS417_01780 0.50 -1.2 396,358 - PS417_01780 0.50 -0.9 396,570 + PS417_01780 0.72 +0.2 396,570 + PS417_01780 0.72 +1.4 396,570 + PS417_01780 0.72 +0.4 396,668 + PS417_01780 0.82 +1.0 396,669 - PS417_01780 0.82 -0.3 396,979 - PS417_01785 0.31 -0.1 396,995 + PS417_01785 0.35 +2.2 397,174 - +1.6 397,299 + +2.0 397,332 - +0.3 397,368 + +1.4 397,372 + +1.2 397,372 + +0.9 397,417 + -0.0 397,421 + -0.5 397,422 - -0.8 397,495 + +1.0 397,495 + +0.0 397,497 + +1.1 397,497 + +0.1 397,497 + +0.6 397,497 + +0.2 397,497 + +4.3 397,497 + +0.7 397,497 + +0.3 397,497 + +0.1 397,497 + -2.0 397,497 + +3.7 397,497 + +0.2 397,497 + -1.0 397,497 + +0.4 397,498 - +0.1 397,498 - -2.8 397,498 - +2.6 397,498 - -2.7 397,498 - +1.4 397,498 - -1.7 397,498 - -2.8 397,498 - -1.6 397,498 - -0.5 397,498 - -1.8 397,498 - -1.3 397,498 - -2.7 397,498 - -2.4 397,498 - -2.2 397,498 - -1.4 397,498 - -3.1 397,502 - -0.8 397,554 + -2.6 397,708 + -1.5 397,766 - PS417_01790 0.13 -0.1 397,912 + PS417_01790 0.21 -2.0 397,912 + PS417_01790 0.21 -3.7 397,913 - PS417_01790 0.21 -2.8 398,087 - PS417_01790 0.31 -0.3
Or see this region's nucleotide sequence