Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01685 and PS417_01690 are separated by 108 nucleotides PS417_01690 and PS417_01695 are separated by 176 nucleotides PS417_01695 and PS417_01700 are separated by 30 nucleotides
PS417_01685: PS417_01685 - membrane protein, at 373,922 to 375,277
_01685
PS417_01690: PS417_01690 - fructose 1,6-bisphosphatase, at 375,386 to 376,396
_01690
PS417_01695: PS417_01695 - hypothetical protein, at 376,573 to 376,827
_01695
PS417_01700: PS417_01700 - lipocalin, at 376,858 to 377,427
_01700
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 375.078 kb on - strand, within PS417_01685 at 375.303 kb on + strand at 375.325 kb on + strand at 375.325 kb on + strand at 376.394 kb on + strand at 376.395 kb on - strand at 376.523 kb on + strand at 376.523 kb on + strand at 376.523 kb on + strand at 376.524 kb on - strand at 376.524 kb on - strand at 376.524 kb on - strand at 376.826 kb on - strand at 376.826 kb on - strand at 376.826 kb on - strand at 376.985 kb on - strand, within PS417_01700 at 377.067 kb on + strand, within PS417_01700 at 377.068 kb on - strand, within PS417_01700 at 377.179 kb on - strand, within PS417_01700 at 377.222 kb on - strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.248 kb on + strand, within PS417_01700 at 377.284 kb on + strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.365 kb on + strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 375,078 - PS417_01685 0.85 -0.5 375,303 + +2.8 375,325 + +1.9 375,325 + -1.9 376,394 + +1.0 376,395 - +1.1 376,523 + -0.3 376,523 + -0.5 376,523 + -0.6 376,524 - +1.3 376,524 - -1.9 376,524 - -1.1 376,826 - -1.1 376,826 - -1.9 376,826 - -0.4 376,985 - PS417_01700 0.22 +1.8 377,067 + PS417_01700 0.37 -1.0 377,068 - PS417_01700 0.37 -1.1 377,179 - PS417_01700 0.56 -2.6 377,222 - PS417_01700 0.64 +0.8 377,233 + PS417_01700 0.66 +1.2 377,233 + PS417_01700 0.66 -0.7 377,234 - PS417_01700 0.66 -1.2 377,234 - PS417_01700 0.66 -0.3 377,234 - PS417_01700 0.66 -0.1 377,234 - PS417_01700 0.66 -0.2 377,234 - PS417_01700 0.66 -0.2 377,234 - PS417_01700 0.66 -0.3 377,234 - PS417_01700 0.66 -0.9 377,248 + PS417_01700 0.68 -0.6 377,284 + PS417_01700 0.75 -0.7 377,285 - PS417_01700 0.75 -1.5 377,285 - PS417_01700 0.75 -0.7 377,365 + PS417_01700 0.89 +0.7 377,366 - PS417_01700 0.89 -1.3 377,366 - PS417_01700 0.89 -0.2
Or see this region's nucleotide sequence