Strain Fitness in Pseudomonas simiae WCS417 around PS417_16895

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16890 and PS417_16895 are separated by 42 nucleotidesPS417_16895 and PS417_16900 are separated by 248 nucleotidesPS417_16900 and PS417_16905 overlap by 4 nucleotides PS417_16890: PS417_16890 - cysteinyl-tRNA synthetase, at 3,681,065 to 3,682,453 _16890 PS417_16895: PS417_16895 - glutamate--tRNA ligase, at 3,682,496 to 3,684,196 _16895 PS417_16900: PS417_16900 - peptidylprolyl isomerase, at 3,684,445 to 3,684,948 _16900 PS417_16905: PS417_16905 - UDP-2,3-diacylglucosamine hydrolase, at 3,684,945 to 3,685,694 _16905 Position (kb) 3682 3683 3684 3685Strain fitness (log2 ratio) -1 0 1 2at 3682.473 kb on - strandat 3682.473 kb on - strandat 3684.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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3,682,473 - +1.2
3,682,473 - +2.2
3,684,274 + +1.2

Or see this region's nucleotide sequence