Strain Fitness in Pseudomonas simiae WCS417 around PS417_16615

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16605 and PS417_16610 are separated by 11 nucleotidesPS417_16610 and PS417_16615 are separated by 9 nucleotidesPS417_16615 and PS417_16620 are separated by 2 nucleotidesPS417_16620 and PS417_16625 overlap by 4 nucleotides PS417_16605: PS417_16605 - NADH:ubiquinone oxidoreductase, at 3,630,269 to 3,631,276 _16605 PS417_16610: PS417_16610 - NADH dehydrogenase, at 3,631,288 to 3,631,836 _16610 PS417_16615: PS417_16615 - NADH dehydrogenase, at 3,631,846 to 3,632,349 _16615 PS417_16620: PS417_16620 - NADH-quinone oxidoreductase subunit K, at 3,632,352 to 3,632,660 _16620 PS417_16625: PS417_16625 - NADH-quinone oxidoreductase subunit L, at 3,632,657 to 3,634,510 _16625 Position (kb) 3631 3632 3633Strain fitness (log2 ratio) -1 0 1at 3631.834 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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3,631,834 + +0.4

Or see this region's nucleotide sequence