Strain Fitness in Pseudomonas simiae WCS417 around PS417_16545

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16540 and PS417_16545 overlap by 4 nucleotidesPS417_16545 and PS417_16550 are separated by 125 nucleotides PS417_16540: PS417_16540 - tRNA 2-thiouridylase, at 3,614,268 to 3,615,392 _16540 PS417_16545: PS417_16545 - DNA repair protein, at 3,615,389 to 3,616,012 _16545 PS417_16550: PS417_16550 - adenylosuccinate lyase, at 3,616,138 to 3,617,508 _16550 Position (kb) 3615 3616 3617Strain fitness (log2 ratio) -1 0 1 2 3at 3615.514 kb on - strand, within PS417_16545at 3615.795 kb on - strand, within PS417_16545at 3615.795 kb on - strand, within PS417_16545at 3616.019 kb on + strandat 3616.019 kb on + strandat 3616.092 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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3,615,514 - PS417_16545 0.20 +3.1
3,615,795 - PS417_16545 0.65 -0.2
3,615,795 - PS417_16545 0.65 -0.6
3,616,019 + +0.7
3,616,019 + -0.0
3,616,092 + +1.9

Or see this region's nucleotide sequence