Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16435 and PS417_16440 are separated by 1 nucleotides PS417_16440 and PS417_16445 overlap by 1 nucleotides PS417_16445 and PS417_16450 overlap by 4 nucleotides PS417_16450 and PS417_16455 overlap by 4 nucleotides
PS417_16435: PS417_16435 - sulfurtransferase, at 3,592,766 to 3,593,158
_16435
PS417_16440: PS417_16440 - sulfur relay protein TusC, at 3,593,160 to 3,593,510
_16440
PS417_16445: PS417_16445 - sulfur relay protein DsrH, at 3,593,510 to 3,593,788
_16445
PS417_16450: PS417_16450 - sulfurtransferase TusE, at 3,593,785 to 3,594,120
_16450
PS417_16455: PS417_16455 - hypothetical protein, at 3,594,117 to 3,595,118
_16455
Position (kb) 3593
3594
3595 Strain fitness (log2 ratio) -1
0
1 at 3593.159 kb on + strand at 3593.159 kb on + strand at 3593.159 kb on + strand at 3594.409 kb on - strand, within PS417_16455 at 3594.522 kb on + strand, within PS417_16455 at 3594.523 kb on - strand, within PS417_16455 at 3594.746 kb on + strand, within PS417_16455 at 3594.746 kb on + strand, within PS417_16455 at 3594.746 kb on + strand, within PS417_16455 at 3594.809 kb on - strand, within PS417_16455 at 3594.809 kb on - strand, within PS417_16455 at 3595.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 3,593,159 + -1.1 3,593,159 + -0.5 3,593,159 + -0.8 3,594,409 - PS417_16455 0.29 +0.4 3,594,522 + PS417_16455 0.40 -0.2 3,594,523 - PS417_16455 0.41 +0.1 3,594,746 + PS417_16455 0.63 +1.2 3,594,746 + PS417_16455 0.63 -1.1 3,594,746 + PS417_16455 0.63 +0.0 3,594,809 - PS417_16455 0.69 -1.7 3,594,809 - PS417_16455 0.69 +0.7 3,595,116 + +0.5
Or see this region's nucleotide sequence