Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01585 and PS417_01590 are separated by 50 nucleotides PS417_01590 and PS417_01595 are separated by 1 nucleotides PS417_01595 and PS417_01600 are separated by 30 nucleotides
PS417_01585: PS417_01585 - amino acid ABC transporter substrate-binding protein, at 349,271 to 350,026
_01585
PS417_01590: PS417_01590 - polysaccharide deacetylase, at 350,077 to 350,850
_01590
PS417_01595: PS417_01595 - peptidase S41, at 350,852 to 352,168
_01595
PS417_01600: PS417_01600 - peptidase M23, at 352,199 to 353,494
_01600
Position (kb) 350
351
352
353 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 349.914 kb on - strand, within PS417_01585 at 350.018 kb on + strand at 350.018 kb on + strand at 350.018 kb on + strand at 350.019 kb on - strand at 350.066 kb on - strand at 350.149 kb on - strand at 350.504 kb on + strand, within PS417_01590 at 350.765 kb on + strand, within PS417_01590 at 350.851 kb on - strand at 352.184 kb on - strand at 352.188 kb on + strand at 352.189 kb on - strand at 352.189 kb on - strand at 352.189 kb on - strand at 352.189 kb on - strand at 352.189 kb on - strand at 352.255 kb on + strand at 352.325 kb on + strand at 352.381 kb on - strand, within PS417_01600 at 353.067 kb on + strand, within PS417_01600 at 353.068 kb on - strand, within PS417_01600 at 353.074 kb on - strand, within PS417_01600 at 353.076 kb on + strand, within PS417_01600 at 353.077 kb on - strand, within PS417_01600 at 353.077 kb on - strand, within PS417_01600 at 353.077 kb on - strand, within PS417_01600
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 349,914 - PS417_01585 0.85 -1.4 350,018 + -0.6 350,018 + +0.1 350,018 + +0.4 350,019 - -0.2 350,066 - +1.2 350,149 - -0.3 350,504 + PS417_01590 0.55 +0.3 350,765 + PS417_01590 0.89 +0.1 350,851 - +6.3 352,184 - -0.1 352,188 + -0.0 352,189 - +0.6 352,189 - -1.2 352,189 - +0.1 352,189 - +1.9 352,189 - -1.1 352,255 + +0.7 352,325 + +1.4 352,381 - PS417_01600 0.14 -1.0 353,067 + PS417_01600 0.67 -0.1 353,068 - PS417_01600 0.67 -0.4 353,074 - PS417_01600 0.68 -0.6 353,076 + PS417_01600 0.68 +1.1 353,077 - PS417_01600 0.68 -1.0 353,077 - PS417_01600 0.68 +1.9 353,077 - PS417_01600 0.68 +2.2
Or see this region's nucleotide sequence