Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01355 and PS417_01360 are separated by 202 nucleotides PS417_01360 and PS417_01365 are separated by 20 nucleotides PS417_01365 and PS417_01370 are separated by 3 nucleotides
PS417_01355: PS417_01355 - membrane protein, at 296,093 to 297,409
_01355
PS417_01360: PS417_01360 - 4-oxalocrotonate tautomerase, at 297,612 to 297,815
_01360
PS417_01365: PS417_01365 - 3-oxoacyl-ACP reductase, at 297,836 to 298,537
_01365
PS417_01370: PS417_01370 - peptidase M48, at 298,541 to 300,118
_01370
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 297.086 kb on + strand, within PS417_01355 at 297.176 kb on + strand, within PS417_01355 at 297.177 kb on - strand, within PS417_01355 at 297.189 kb on - strand, within PS417_01355 at 297.218 kb on - strand, within PS417_01355 at 297.266 kb on + strand, within PS417_01355 at 297.267 kb on - strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.273 kb on + strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.274 kb on - strand, within PS417_01355 at 297.350 kb on + strand at 297.351 kb on - strand at 297.407 kb on + strand at 297.408 kb on - strand at 297.408 kb on - strand at 297.469 kb on + strand at 297.518 kb on + strand at 297.518 kb on + strand at 297.519 kb on - strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.555 kb on + strand at 297.651 kb on - strand, within PS417_01360 at 297.771 kb on + strand, within PS417_01360 at 298.100 kb on + strand at 298.154 kb on + strand, within PS417_01365 at 298.154 kb on + strand, within PS417_01365 at 298.509 kb on + strand at 298.510 kb on - strand at 298.579 kb on + strand at 298.579 kb on + strand at 298.656 kb on - strand at 298.860 kb on + strand, within PS417_01370 at 298.971 kb on + strand, within PS417_01370 at 298.971 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.122 kb on + strand, within PS417_01370 at 299.123 kb on - strand, within PS417_01370 at 299.455 kb on - strand, within PS417_01370
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 297,086 + PS417_01355 0.75 -0.7 297,176 + PS417_01355 0.82 -0.5 297,177 - PS417_01355 0.82 +3.6 297,189 - PS417_01355 0.83 -0.7 297,218 - PS417_01355 0.85 -1.2 297,266 + PS417_01355 0.89 -0.4 297,267 - PS417_01355 0.89 +1.0 297,273 + PS417_01355 0.90 +0.9 297,273 + PS417_01355 0.90 -1.2 297,274 - PS417_01355 0.90 -0.3 297,274 - PS417_01355 0.90 -0.9 297,350 + -0.2 297,351 - +2.0 297,407 + -2.6 297,408 - +1.1 297,408 - -0.1 297,469 + +1.6 297,518 + -0.2 297,518 + +0.4 297,519 - -0.8 297,555 + -0.4 297,555 + +1.8 297,555 + +0.5 297,651 - PS417_01360 0.19 -0.6 297,771 + PS417_01360 0.78 -0.8 298,100 + +2.6 298,154 + PS417_01365 0.45 -0.9 298,154 + PS417_01365 0.45 +3.0 298,509 + +0.2 298,510 - -0.7 298,579 + +0.3 298,579 + -1.2 298,656 - +0.1 298,860 + PS417_01370 0.20 +0.1 298,971 + PS417_01370 0.27 +1.1 298,971 + PS417_01370 0.27 +2.2 299,122 + PS417_01370 0.37 +0.4 299,122 + PS417_01370 0.37 -0.3 299,122 + PS417_01370 0.37 +0.2 299,122 + PS417_01370 0.37 -0.1 299,123 - PS417_01370 0.37 +0.7 299,455 - PS417_01370 0.58 -1.9
Or see this region's nucleotide sequence