Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01285 and PS417_01290 are separated by 87 nucleotides PS417_01290 and PS417_01295 overlap by 4 nucleotides PS417_01295 and PS417_01300 are separated by 126 nucleotides PS417_01300 and PS417_01305 are separated by 26 nucleotides
PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147
_01285
PS417_01290: PS417_01290 - ADP-ribose diphosphatase, at 280,235 to 280,801
_01290
PS417_01295: PS417_01295 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 280,798 to 281,634
_01295
PS417_01300: PS417_01300 - thioesterase, at 281,761 to 282,216
_01300
PS417_01305: PS417_01305 - Fis family transcriptional regulator, at 282,243 to 283,619
_01305
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.949 kb on - strand, within PS417_01285 at 279.971 kb on - strand, within PS417_01285 at 280.162 kb on + strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.163 kb on - strand at 280.166 kb on + strand at 280.166 kb on + strand at 280.167 kb on - strand at 280.167 kb on - strand at 280.203 kb on + strand at 280.205 kb on + strand at 280.206 kb on - strand at 280.206 kb on - strand at 280.269 kb on + strand at 280.430 kb on + strand, within PS417_01290 at 280.452 kb on - strand, within PS417_01290 at 280.754 kb on + strand at 281.192 kb on - strand, within PS417_01295 at 281.192 kb on - strand, within PS417_01295 at 281.577 kb on - strand at 281.645 kb on - strand at 281.778 kb on - strand at 281.778 kb on - strand at 281.867 kb on + strand, within PS417_01300 at 281.868 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 282.291 kb on + strand at 282.291 kb on + strand at 282.291 kb on + strand at 282.428 kb on + strand at 282.542 kb on + strand at 282.542 kb on + strand, within PS417_01305
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 279,949 - PS417_01285 0.70 -0.4 279,971 - PS417_01285 0.73 +0.1 280,162 + -0.8 280,162 + -2.6 280,162 + +0.7 280,163 - +0.4 280,166 + -0.2 280,166 + +2.6 280,167 - -1.1 280,167 - +0.6 280,203 + -0.4 280,205 + -1.8 280,206 - -0.7 280,206 - +0.9 280,269 + +0.5 280,430 + PS417_01290 0.34 -0.9 280,452 - PS417_01290 0.38 +0.6 280,754 + +1.5 281,192 - PS417_01295 0.47 -0.3 281,192 - PS417_01295 0.47 -0.6 281,577 - -1.6 281,645 - +2.3 281,778 - +0.3 281,778 - -1.0 281,867 + PS417_01300 0.23 -1.4 281,868 - PS417_01300 0.23 -1.6 281,977 - PS417_01300 0.47 -0.1 281,977 - PS417_01300 0.47 -1.9 281,977 - PS417_01300 0.47 -0.7 281,977 - PS417_01300 0.47 -2.4 281,977 - PS417_01300 0.47 +1.6 282,291 + +0.7 282,291 + +2.4 282,291 + +0.4 282,428 + +2.6 282,542 + +2.6 282,542 + PS417_01305 0.22 +0.9
Or see this region's nucleotide sequence