Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01195 and PS417_01200 are separated by 39 nucleotides PS417_01200 and PS417_01205 are separated by 104 nucleotides PS417_01205 and PS417_01210 are separated by 179 nucleotides
PS417_01195: PS417_01195 - RNA-binding protein S4, at 262,999 to 263,406
_01195
PS417_01200: PS417_01200 - phosphoesterase, at 263,446 to 264,246
_01200
PS417_01205: PS417_01205 - molecular chaperone Hsp33, at 264,351 to 265,253
_01205
PS417_01210: PS417_01210 - hypothetical protein, at 265,433 to 266,974
_01210
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 263.539 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.561 kb on + strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.562 kb on - strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.609 kb on + strand, within PS417_01200 at 263.859 kb on + strand, within PS417_01200 at 263.877 kb on + strand, within PS417_01200 at 263.878 kb on - strand, within PS417_01200 at 263.937 kb on + strand, within PS417_01200 at 263.944 kb on + strand, within PS417_01200 at 263.945 kb on - strand, within PS417_01200 at 264.058 kb on + strand, within PS417_01200 at 264.184 kb on + strand at 264.184 kb on + strand at 264.246 kb on + strand at 264.247 kb on - strand at 264.316 kb on + strand at 264.316 kb on + strand at 265.370 kb on + strand at 265.371 kb on - strand at 265.455 kb on + strand at 265.457 kb on + strand at 265.600 kb on + strand, within PS417_01210 at 265.600 kb on + strand, within PS417_01210 at 265.601 kb on - strand, within PS417_01210 at 265.601 kb on - strand, within PS417_01210 at 265.601 kb on - strand, within PS417_01210 at 265.601 kb on - strand, within PS417_01210 at 265.601 kb on - strand, within PS417_01210 at 265.826 kb on + strand, within PS417_01210 at 265.826 kb on + strand, within PS417_01210 at 266.204 kb on + strand, within PS417_01210 at 266.204 kb on + strand, within PS417_01210 at 266.205 kb on - strand, within PS417_01210
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 263,539 + PS417_01200 0.12 -0.1 263,561 + PS417_01200 0.14 -0.1 263,561 + PS417_01200 0.14 +1.2 263,562 - PS417_01200 0.14 -0.7 263,562 - PS417_01200 0.14 -0.9 263,609 + PS417_01200 0.20 +1.0 263,609 + PS417_01200 0.20 +2.4 263,609 + PS417_01200 0.20 -1.1 263,859 + PS417_01200 0.52 +0.2 263,877 + PS417_01200 0.54 +0.7 263,878 - PS417_01200 0.54 -1.3 263,937 + PS417_01200 0.61 +1.0 263,944 + PS417_01200 0.62 +0.9 263,945 - PS417_01200 0.62 -0.7 264,058 + PS417_01200 0.76 +2.2 264,184 + +3.9 264,184 + -2.5 264,246 + -0.3 264,247 - +0.8 264,316 + +1.6 264,316 + +0.9 265,370 + +0.2 265,371 - -0.1 265,455 + -0.3 265,457 + +0.2 265,600 + PS417_01210 0.11 +0.3 265,600 + PS417_01210 0.11 +0.1 265,601 - PS417_01210 0.11 -1.0 265,601 - PS417_01210 0.11 +0.1 265,601 - PS417_01210 0.11 -2.5 265,601 - PS417_01210 0.11 -0.3 265,601 - PS417_01210 0.11 +0.0 265,826 + PS417_01210 0.25 +0.5 265,826 + PS417_01210 0.25 +0.0 266,204 + PS417_01210 0.50 -0.3 266,204 + PS417_01210 0.50 -0.7 266,205 - PS417_01210 0.50 -2.4
Or see this region's nucleotide sequence