Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01170 and PS417_01175 are separated by 117 nucleotides PS417_01175 and PS417_01180 are separated by 140 nucleotides
PS417_01170: PS417_01170 - chemotaxis protein CheY, at 258,394 to 259,134
_01170
PS417_01175: PS417_01175 - ATPase, at 259,252 to 260,565
_01175
PS417_01180: PS417_01180 - ribosomal protein S6 modification protein, at 260,706 to 261,611
_01180
Position (kb) 259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2 at 258.345 kb on + strand at 258.345 kb on + strand at 258.379 kb on + strand at 259.236 kb on + strand at 259.237 kb on - strand at 259.237 kb on - strand at 259.237 kb on - strand at 259.240 kb on + strand at 259.240 kb on + strand at 259.240 kb on + strand at 259.240 kb on + strand at 260.564 kb on - strand at 260.564 kb on - strand at 260.582 kb on + strand at 260.615 kb on + strand at 260.615 kb on + strand at 260.615 kb on + strand at 260.616 kb on - strand at 260.732 kb on + strand at 260.733 kb on - strand at 261.076 kb on + strand, within PS417_01180 at 261.301 kb on - strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.398 kb on - strand, within PS417_01180 at 261.406 kb on - strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.500 kb on - strand, within PS417_01180
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 258,345 + +0.6 258,345 + +1.4 258,379 + +0.3 259,236 + +0.2 259,237 - -0.7 259,237 - +0.4 259,237 - +0.0 259,240 + -0.2 259,240 + +0.0 259,240 + -2.6 259,240 + +2.0 260,564 - +0.1 260,564 - +1.4 260,582 + +1.2 260,615 + -0.6 260,615 + +0.9 260,615 + +0.3 260,616 - -0.2 260,732 + -0.7 260,733 - -0.3 261,076 + PS417_01180 0.41 -0.7 261,301 - PS417_01180 0.66 +0.4 261,397 + PS417_01180 0.76 -0.2 261,397 + PS417_01180 0.76 +0.1 261,397 + PS417_01180 0.76 -0.3 261,398 - PS417_01180 0.76 -0.6 261,406 - PS417_01180 0.77 -0.5 261,499 + PS417_01180 0.88 +0.5 261,499 + PS417_01180 0.88 +1.2 261,499 + PS417_01180 0.88 -0.2 261,499 + PS417_01180 0.88 -1.0 261,499 + PS417_01180 0.88 +1.6 261,500 - PS417_01180 0.88 -1.7
Or see this region's nucleotide sequence