Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01150 and PS417_01155 are separated by 241 nucleotides PS417_01155 and PS417_01160 are separated by 214 nucleotides PS417_01160 and PS417_01165 overlap by 1 nucleotides
PS417_01150: PS417_01150 - taurine ABC transporter substrate-binding protein, at 252,312 to 253,289
_01150
PS417_01155: PS417_01155 - glutamate--cysteine ligase, at 253,531 to 255,114
_01155
PS417_01160: PS417_01160 - hypothetical protein, at 255,329 to 255,712
_01160
PS417_01165: PS417_01165 - transcription accessory protein, at 255,712 to 258,036
_01165
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -1
0
1
2 at 252.584 kb on - strand, within PS417_01150 at 252.757 kb on + strand, within PS417_01150 at 252.758 kb on - strand at 252.758 kb on - strand, within PS417_01150 at 252.758 kb on - strand, within PS417_01150 at 252.825 kb on + strand, within PS417_01150 at 253.185 kb on + strand, within PS417_01150 at 253.532 kb on + strand at 253.533 kb on - strand at 255.168 kb on + strand at 255.206 kb on + strand at 255.330 kb on + strand at 255.332 kb on + strand at 255.332 kb on + strand at 255.470 kb on - strand, within PS417_01160 at 255.471 kb on + strand, within PS417_01160 at 255.471 kb on + strand, within PS417_01160 at 255.472 kb on - strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.545 kb on - strand, within PS417_01160 at 255.545 kb on - strand, within PS417_01160
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 252,584 - PS417_01150 0.28 -0.5 252,757 + PS417_01150 0.46 -0.8 252,758 - +1.2 252,758 - PS417_01150 0.46 -0.0 252,758 - PS417_01150 0.46 -0.0 252,825 + PS417_01150 0.52 -0.2 253,185 + PS417_01150 0.89 -0.3 253,532 + +1.2 253,533 - -0.2 255,168 + -1.2 255,206 + -0.5 255,330 + +2.2 255,332 + +1.9 255,332 + -0.2 255,470 - PS417_01160 0.37 +1.0 255,471 + PS417_01160 0.37 -0.3 255,471 + PS417_01160 0.37 +0.8 255,472 - PS417_01160 0.37 -1.0 255,544 + PS417_01160 0.56 -0.4 255,544 + PS417_01160 0.56 -0.5 255,544 + PS417_01160 0.56 -0.9 255,545 - PS417_01160 0.56 +1.6 255,545 - PS417_01160 0.56 -0.4
Or see this region's nucleotide sequence