Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01060 and PS417_01065 overlap by 11 nucleotides PS417_01065 and PS417_01070 overlap by 4 nucleotides PS417_01070 and PS417_01075 are separated by 53 nucleotides
PS417_01060: PS417_01060 - ABC transporter permease, at 232,560 to 233,204
_01060
PS417_01065: PS417_01065 - ABC transporter, at 233,194 to 234,309
_01065
PS417_01070: PS417_01070 - methionine ABC transporter substrate-binding protein, at 234,306 to 235,121
_01070
PS417_01075: PS417_01075 - N5,N10-methylene tetrahydromethanopterin reductase, at 235,175 to 236,527
_01075
Position (kb) 233
234
235 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 232.244 kb on - strand at 232.284 kb on + strand at 232.284 kb on + strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.302 kb on + strand at 232.313 kb on + strand at 232.313 kb on + strand at 232.314 kb on - strand at 232.314 kb on - strand at 232.315 kb on + strand at 232.315 kb on + strand at 232.316 kb on - strand at 232.316 kb on - strand at 232.321 kb on + strand at 232.321 kb on + strand at 232.349 kb on + strand at 232.349 kb on + strand at 232.350 kb on - strand at 232.350 kb on - strand at 232.557 kb on + strand at 232.558 kb on - strand at 232.558 kb on - strand at 232.955 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060 at 233.320 kb on - strand, within PS417_01065 at 234.388 kb on + strand, within PS417_01070 at 234.389 kb on - strand, within PS417_01070 at 234.458 kb on - strand, within PS417_01070 at 234.458 kb on - strand, within PS417_01070 at 234.458 kb on - strand, within PS417_01070 at 234.458 kb on - strand, within PS417_01070 at 234.526 kb on + strand, within PS417_01070 at 234.527 kb on - strand, within PS417_01070 at 234.527 kb on - strand, within PS417_01070 at 234.527 kb on - strand, within PS417_01070 at 234.527 kb on - strand, within PS417_01070 at 234.646 kb on + strand, within PS417_01070 at 234.647 kb on - strand, within PS417_01070 at 234.651 kb on + strand, within PS417_01070 at 234.772 kb on + strand, within PS417_01070 at 234.772 kb on + strand, within PS417_01070 at 234.773 kb on - strand, within PS417_01070 at 234.880 kb on + strand, within PS417_01070 at 234.880 kb on + strand, within PS417_01070 at 234.957 kb on - strand, within PS417_01070 at 235.139 kb on - strand at 235.149 kb on + strand at 235.150 kb on - strand at 235.150 kb on - strand at 235.150 kb on - strand at 235.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 232,244 - -4.1 232,284 + +1.4 232,284 + +0.6 232,285 - +1.3 232,285 - -0.4 232,285 - -0.0 232,302 + -0.5 232,313 + -0.5 232,313 + -1.3 232,314 - -0.0 232,314 - -0.7 232,315 + -1.3 232,315 + +0.5 232,316 - -0.3 232,316 - +2.4 232,321 + -0.0 232,321 + +0.0 232,349 + -0.9 232,349 + +0.6 232,350 - -0.1 232,350 - -0.8 232,557 + +3.2 232,558 - +0.7 232,558 - -0.9 232,955 - PS417_01060 0.61 +1.2 233,075 - PS417_01060 0.80 +0.5 233,075 - PS417_01060 0.80 -1.2 233,075 - PS417_01060 0.80 -1.6 233,075 - PS417_01060 0.80 +0.3 233,078 + PS417_01060 0.80 -0.5 233,078 + PS417_01060 0.80 -0.6 233,078 + PS417_01060 0.80 +3.8 233,079 - PS417_01060 0.80 -0.1 233,079 - PS417_01060 0.80 +0.7 233,320 - PS417_01065 0.11 +2.0 234,388 + PS417_01070 0.10 -2.5 234,389 - PS417_01070 0.10 -1.5 234,458 - PS417_01070 0.19 -0.4 234,458 - PS417_01070 0.19 -0.9 234,458 - PS417_01070 0.19 -1.2 234,458 - PS417_01070 0.19 -0.2 234,526 + PS417_01070 0.27 +0.6 234,527 - PS417_01070 0.27 -0.2 234,527 - PS417_01070 0.27 +0.9 234,527 - PS417_01070 0.27 -0.8 234,527 - PS417_01070 0.27 +1.5 234,646 + PS417_01070 0.42 -0.0 234,647 - PS417_01070 0.42 +0.1 234,651 + PS417_01070 0.42 -0.2 234,772 + PS417_01070 0.57 +0.1 234,772 + PS417_01070 0.57 -0.1 234,773 - PS417_01070 0.57 +0.4 234,880 + PS417_01070 0.70 -1.6 234,880 + PS417_01070 0.70 +1.0 234,957 - PS417_01070 0.80 +0.6 235,139 - -2.1 235,149 + -0.6 235,150 - +0.9 235,150 - +1.4 235,150 - +0.3 235,185 + +0.1
Or see this region's nucleotide sequence