Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00885 and PS417_00890 are separated by 167 nucleotides PS417_00890 and PS417_00895 are separated by 371 nucleotides
PS417_00885: PS417_00885 - integrase, at 197,380 to 198,615
_00885
PS417_00890: PS417_00890 - tRNA-Arg, at 198,783 to 198,859
_00890
PS417_00895: PS417_00895 - succinate-semialdehyde dehydrogenase, at 199,231 to 200,673
_00895
Position (kb) 198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 197.813 kb on - strand, within PS417_00885 at 197.875 kb on + strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.879 kb on - strand, within PS417_00885 at 197.924 kb on + strand, within PS417_00885 at 197.925 kb on - strand, within PS417_00885 at 197.991 kb on + strand, within PS417_00885 at 197.992 kb on - strand, within PS417_00885 at 198.065 kb on + strand, within PS417_00885 at 198.065 kb on + strand, within PS417_00885 at 198.066 kb on - strand, within PS417_00885 at 198.066 kb on - strand, within PS417_00885 at 198.133 kb on + strand, within PS417_00885 at 198.160 kb on + strand, within PS417_00885 at 198.220 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.495 kb on + strand at 198.513 kb on - strand at 198.539 kb on + strand at 198.543 kb on + strand at 198.543 kb on + strand at 198.543 kb on + strand at 198.544 kb on - strand at 198.544 kb on - strand at 198.544 kb on - strand at 198.622 kb on + strand at 198.622 kb on + strand at 198.623 kb on - strand at 198.636 kb on + strand at 198.637 kb on - strand at 198.637 kb on - strand at 198.637 kb on - strand at 198.652 kb on + strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.751 kb on + strand at 198.752 kb on - strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.782 kb on - strand at 199.007 kb on - strand at 199.015 kb on + strand at 199.051 kb on + strand at 199.052 kb on - strand at 199.062 kb on - strand at 199.076 kb on + strand at 199.188 kb on + strand at 199.188 kb on + strand at 199.189 kb on - strand at 199.189 kb on - strand at 199.217 kb on + strand at 199.218 kb on - strand at 199.239 kb on + strand at 199.350 kb on + strand at 199.610 kb on - strand, within PS417_00895 at 199.610 kb on - strand, within PS417_00895
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 197,813 - PS417_00885 0.35 -0.5 197,875 + PS417_00885 0.40 -0.7 197,876 - PS417_00885 0.40 -0.1 197,876 - PS417_00885 0.40 +0.5 197,876 - PS417_00885 0.40 -0.2 197,876 - PS417_00885 0.40 -1.8 197,878 + PS417_00885 0.40 +9.3 197,878 + PS417_00885 0.40 +0.6 197,878 + PS417_00885 0.40 +1.6 197,879 - PS417_00885 0.40 +0.0 197,924 + PS417_00885 0.44 +0.1 197,925 - PS417_00885 0.44 +1.2 197,991 + PS417_00885 0.49 +0.5 197,992 - PS417_00885 0.50 -2.4 198,065 + PS417_00885 0.55 -1.5 198,065 + PS417_00885 0.55 +0.6 198,066 - PS417_00885 0.56 -1.4 198,066 - PS417_00885 0.56 -0.2 198,133 + PS417_00885 0.61 -0.1 198,160 + PS417_00885 0.63 +1.0 198,220 + PS417_00885 0.68 -0.0 198,234 + PS417_00885 0.69 -0.3 198,234 + PS417_00885 0.69 +0.2 198,234 + PS417_00885 0.69 -1.0 198,495 + +0.7 198,513 - +1.2 198,539 + -0.7 198,543 + +1.0 198,543 + +0.0 198,543 + +1.4 198,544 - -1.8 198,544 - +0.9 198,544 - -2.9 198,622 + -0.9 198,622 + +0.9 198,623 - +0.5 198,636 + +1.3 198,637 - +1.5 198,637 - -1.8 198,637 - -0.4 198,652 + +1.4 198,653 - -0.3 198,653 - -1.3 198,653 - -0.6 198,653 - -0.5 198,751 + +2.2 198,752 - -2.6 198,779 + -0.7 198,779 + -1.5 198,779 + -1.6 198,779 + -1.0 198,779 + -1.2 198,780 - -2.3 198,780 - -0.1 198,780 - -1.7 198,780 - -1.4 198,781 + -0.5 198,781 + +1.2 198,781 + -3.6 198,781 + -1.1 198,781 + +0.2 198,781 + -2.6 198,782 - +1.5 199,007 - -1.7 199,015 + +0.9 199,051 + -0.1 199,052 - -1.8 199,062 - +0.4 199,076 + +0.6 199,188 + -0.4 199,188 + +0.7 199,189 - -2.3 199,189 - +1.4 199,217 + -1.2 199,218 - -1.7 199,239 + +1.8 199,350 + -1.8 199,610 - PS417_00895 0.26 -0.5 199,610 - PS417_00895 0.26 +0.8
Or see this region's nucleotide sequence