Strain Fitness in Pseudomonas simiae WCS417 around PS417_08905

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_08900 and PS417_08905 are separated by 100 nucleotidesPS417_08905 and PS417_08910 are separated by 204 nucleotides PS417_08900: PS417_08900 - dihydrolipoamide succinyltransferase, at 1,937,521 to 1,938,747 _08900 PS417_08905: PS417_08905 - dihydrolipoamide dehydrogenase, at 1,938,848 to 1,940,284 _08905 PS417_08910: PS417_08910 - succinyl-CoA synthetase subunit beta, at 1,940,489 to 1,941,655 _08910 Position (kb) 1938 1939 1940 1941Strain fitness (log2 ratio) -1 0 1at 1938.832 kb on + strandat 1940.291 kb on + strandat 1940.291 kb on + strandat 1940.294 kb on + strandat 1940.439 kb on + strandat 1940.439 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
1,938,832 + +1.5
1,940,291 + -1.5
1,940,291 + +0.7
1,940,294 + +0.0
1,940,439 + -0.1
1,940,439 + +1.3

Or see this region's nucleotide sequence