Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08340 and PS417_08345 are separated by 198 nucleotides PS417_08345 and PS417_08350 are separated by 96 nucleotides
PS417_08340: PS417_08340 - type IV secretion protein Rhs, at 1,824,846 to 1,829,564
_08340
PS417_08345: PS417_08345 - chemotaxis protein, at 1,829,763 to 1,831,244
_08345
PS417_08350: PS417_08350 - preprotein translocase subunit TatD, at 1,831,341 to 1,832,147
_08350
Position (kb)
1829
1830
1831
1832 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1828.858 kb on + strand, within PS417_08340 at 1828.858 kb on + strand, within PS417_08340 at 1828.858 kb on + strand, within PS417_08340 at 1828.858 kb on + strand, within PS417_08340 at 1828.859 kb on - strand, within PS417_08340 at 1828.859 kb on - strand, within PS417_08340 at 1828.906 kb on + strand, within PS417_08340 at 1828.907 kb on - strand, within PS417_08340 at 1828.936 kb on + strand, within PS417_08340 at 1828.937 kb on - strand, within PS417_08340 at 1829.089 kb on + strand, within PS417_08340 at 1829.098 kb on + strand at 1829.098 kb on + strand at 1829.099 kb on - strand at 1829.099 kb on - strand at 1829.135 kb on - strand at 1829.268 kb on - strand at 1829.410 kb on - strand at 1829.764 kb on + strand at 1829.765 kb on - strand at 1830.528 kb on + strand, within PS417_08345 at 1830.528 kb on + strand, within PS417_08345 at 1830.528 kb on + strand, within PS417_08345 at 1830.708 kb on + strand, within PS417_08345 at 1830.709 kb on - strand, within PS417_08345 at 1830.817 kb on + strand, within PS417_08345 at 1830.818 kb on - strand, within PS417_08345 at 1830.818 kb on - strand, within PS417_08345 at 1830.818 kb on - strand, within PS417_08345 at 1830.818 kb on - strand, within PS417_08345 at 1830.818 kb on - strand, within PS417_08345 at 1830.818 kb on - strand, within PS417_08345 at 1830.881 kb on - strand, within PS417_08345 at 1830.881 kb on - strand, within PS417_08345 at 1830.881 kb on - strand, within PS417_08345 at 1830.944 kb on + strand at 1831.080 kb on + strand, within PS417_08345 at 1831.153 kb on + strand at 1831.153 kb on + strand at 1831.153 kb on + strand at 1831.153 kb on + strand at 1831.173 kb on - strand at 1831.223 kb on + strand at 1831.223 kb on + strand at 1831.224 kb on - strand at 1831.457 kb on - strand, within PS417_08350 at 1831.513 kb on + strand, within PS417_08350 at 1831.514 kb on - strand, within PS417_08350 at 1831.639 kb on + strand, within PS417_08350 at 1831.998 kb on + strand, within PS417_08350 at 1832.068 kb on + strand at 1832.082 kb on + strand at 1832.082 kb on + strand at 1832.196 kb on - strand at 1832.198 kb on - strand at 1832.214 kb on + strand at 1832.214 kb on + strand at 1832.215 kb on - strand at 1832.225 kb on - strand at 1832.226 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,828,858 + PS417_08340 0.85 +0.7 1,828,858 + PS417_08340 0.85 +2.5 1,828,858 + PS417_08340 0.85 -0.7 1,828,858 + PS417_08340 0.85 -2.0 1,828,859 - PS417_08340 0.85 -0.6 1,828,859 - PS417_08340 0.85 -0.2 1,828,906 + PS417_08340 0.86 -0.9 1,828,907 - PS417_08340 0.86 +0.5 1,828,936 + PS417_08340 0.87 +1.4 1,828,937 - PS417_08340 0.87 -0.9 1,829,089 + PS417_08340 0.90 -0.9 1,829,098 + -1.1 1,829,098 + -1.7 1,829,099 - -0.2 1,829,099 - -0.2 1,829,135 - -0.2 1,829,268 - +0.8 1,829,410 - -0.7 1,829,764 + -0.1 1,829,765 - +0.7 1,830,528 + PS417_08345 0.52 -1.6 1,830,528 + PS417_08345 0.52 -1.5 1,830,528 + PS417_08345 0.52 -0.7 1,830,708 + PS417_08345 0.64 -1.2 1,830,709 - PS417_08345 0.64 -1.7 1,830,817 + PS417_08345 0.71 -1.4 1,830,818 - PS417_08345 0.71 -1.9 1,830,818 - PS417_08345 0.71 -1.4 1,830,818 - PS417_08345 0.71 -1.3 1,830,818 - PS417_08345 0.71 -2.1 1,830,818 - PS417_08345 0.71 -2.2 1,830,818 - PS417_08345 0.71 -2.2 1,830,881 - PS417_08345 0.75 -2.4 1,830,881 - PS417_08345 0.75 -1.5 1,830,881 - PS417_08345 0.75 -0.0 1,830,944 + +1.0 1,831,080 + PS417_08345 0.89 -0.2 1,831,153 + -1.4 1,831,153 + -2.5 1,831,153 + +0.7 1,831,153 + -2.9 1,831,173 - +1.8 1,831,223 + -0.2 1,831,223 + +0.2 1,831,224 - -1.9 1,831,457 - PS417_08350 0.14 -0.3 1,831,513 + PS417_08350 0.21 +0.3 1,831,514 - PS417_08350 0.21 -0.4 1,831,639 + PS417_08350 0.37 +1.4 1,831,998 + PS417_08350 0.81 +0.5 1,832,068 + -0.7 1,832,082 + +1.5 1,832,082 + -0.6 1,832,196 - -0.7 1,832,198 - +0.4 1,832,214 + +0.2 1,832,214 + +0.1 1,832,215 - +0.6 1,832,225 - -1.2 1,832,226 + +0.0
Or see this region's nucleotide sequence