Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08230 and PS417_08235 are separated by 24 nucleotides PS417_08235 and PS417_08240 are separated by 2 nucleotides PS417_08240 and PS417_08245 are separated by 12 nucleotides
PS417_08230: PS417_08230 - lipopolysaccharide biosynthesis protein RfbH, at 1,803,249 to 1,804,562
_08230
PS417_08235: PS417_08235 - CDP-glucose 4,6-dehydratase, at 1,804,587 to 1,805,672
_08235
PS417_08240: PS417_08240 - glucose-1-phosphate cytidylyltransferase, at 1,805,675 to 1,806,448
_08240
PS417_08245: PS417_08245 - CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase, at 1,806,461 to 1,807,450
_08245
Position (kb) 1804
1805
1806 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1803.725 kb on - strand, within PS417_08230 at 1804.589 kb on - strand at 1804.618 kb on + strand at 1804.619 kb on - strand at 1804.772 kb on - strand, within PS417_08235 at 1805.053 kb on - strand, within PS417_08235 at 1805.195 kb on - strand, within PS417_08235 at 1805.354 kb on - strand, within PS417_08235 at 1805.673 kb on - strand at 1805.753 kb on - strand, within PS417_08240 at 1806.069 kb on + strand, within PS417_08240 at 1806.567 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,803,725 - PS417_08230 0.36 -1.0 1,804,589 - +2.4 1,804,618 + +0.1 1,804,619 - +0.3 1,804,772 - PS417_08235 0.17 +0.4 1,805,053 - PS417_08235 0.43 +1.8 1,805,195 - PS417_08235 0.56 +5.1 1,805,354 - PS417_08235 0.71 +1.1 1,805,673 - +0.4 1,805,753 - PS417_08240 0.10 -0.1 1,806,069 + PS417_08240 0.51 -0.4 1,806,567 + +2.1
Or see this region's nucleotide sequence