Strain Fitness in Pseudomonas simiae WCS417 around PS417_08120

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08115 and PS417_08120 are separated by 243 nucleotidesPS417_08120 and PS417_08125 overlap by 1 nucleotides PS417_08115: PS417_08115 - DNA gyrase subunit A, at 1,775,080 to 1,777,734 _08115 PS417_08120: PS417_08120 - MFS transporter, at 1,777,978 to 1,779,063 _08120 PS417_08125: PS417_08125 - prephenate dehydratase, at 1,779,063 to 1,780,157 _08125 Position (kb) 1777 1778 1779 1780Strain fitness (log2 ratio) -2 -1 0 1at 1777.732 kb on + strandat 1777.733 kb on - strandat 1777.792 kb on + strandat 1777.793 kb on - strandat 1779.643 kb on - strand, within PS417_08125

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,777,732 + +0.1
1,777,733 - +1.1
1,777,792 + -1.2
1,777,793 - -2.0
1,779,643 - PS417_08125 0.53 -1.0

Or see this region's nucleotide sequence